Hb_121954_010

Information

Type -
Description -
Location Contig121954: 12114-17543
Sequence    

Annotation

kegg
ID csv:101203289
description uncharacterized LOC101203289
nr
ID XP_012451939.1
description PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID E5GBB7
description Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121954_010 0.0 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
2 Hb_074822_010 7.73127e-05 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
3 Hb_003279_010 0.000270451 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
4 Hb_005379_010 0.0018476858 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_000646_030 0.0023794556 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_025662_020 0.0024126265 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_003797_030 0.0025493618 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_000300_460 0.0034945387 - - Mavicyanin, putative [Ricinus communis]
9 Hb_000143_070 0.0101998941 - - -
10 Hb_014929_010 0.0184533202 - - -
11 Hb_004951_050 0.0222298801 - - conserved hypothetical protein [Ricinus communis]
12 Hb_012807_090 0.0299747306 - - PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
13 Hb_000329_460 0.0385661329 - - PREDICTED: protein transport protein Sec61 subunit beta [Cucumis sativus]
14 Hb_000248_040 0.0622236926 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
15 Hb_002149_030 0.1269508017 - - PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
16 Hb_002850_030 0.1444077657 - - -
17 Hb_002042_240 0.1708772586 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_079902_030 0.2012590864 - - conserved hypothetical protein [Ricinus communis]
19 Hb_017415_010 0.2106842734 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
20 Hb_004018_010 0.2114581222 - - PREDICTED: uncharacterized protein LOC105784835 [Gossypium raimondii]

Gene co-expression network

sample Hb_121954_010 Hb_121954_010 Hb_074822_010 Hb_074822_010 Hb_121954_010--Hb_074822_010 Hb_003279_010 Hb_003279_010 Hb_121954_010--Hb_003279_010 Hb_005379_010 Hb_005379_010 Hb_121954_010--Hb_005379_010 Hb_000646_030 Hb_000646_030 Hb_121954_010--Hb_000646_030 Hb_025662_020 Hb_025662_020 Hb_121954_010--Hb_025662_020 Hb_003797_030 Hb_003797_030 Hb_121954_010--Hb_003797_030 Hb_074822_010--Hb_003279_010 Hb_074822_010--Hb_005379_010 Hb_074822_010--Hb_000646_030 Hb_074822_010--Hb_025662_020 Hb_074822_010--Hb_003797_030 Hb_003279_010--Hb_005379_010 Hb_003279_010--Hb_000646_030 Hb_003279_010--Hb_025662_020 Hb_003279_010--Hb_003797_030 Hb_005379_010--Hb_000646_030 Hb_005379_010--Hb_025662_020 Hb_005379_010--Hb_003797_030 Hb_000646_030--Hb_025662_020 Hb_000646_030--Hb_003797_030 Hb_025662_020--Hb_003797_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0113077 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0426107

CAGE analysis