Hb_121992_010

Information

Type -
Description -
Location Contig121992: 286-1110
Sequence    

Annotation

kegg
ID pop:POPTR_0005s04441g
description hypothetical protein
nr
ID XP_006382686.1
description hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
swissprot
ID Q42484
description Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1
trembl
ID U5GAD8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s04441g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121992_010 0.0 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
2 Hb_001304_130 0.1131360679 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
3 Hb_136880_010 0.1215304785 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
4 Hb_012788_010 0.1376109679 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
5 Hb_147218_010 0.1610967244 - - Disease resistance protein RPS5, putative [Ricinus communis]
6 Hb_086336_010 0.1843012346 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
7 Hb_001485_010 0.1934768757 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
8 Hb_002003_040 0.2026522945 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
9 Hb_151706_010 0.2060305345 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
10 Hb_065500_010 0.2062730104 - - -
11 Hb_010261_030 0.2063147689 - - polyprotein [Citrus endogenous pararetrovirus]
12 Hb_000875_070 0.2063760522 - - -
13 Hb_002420_010 0.2069920495 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
14 Hb_001677_230 0.2105490642 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
15 Hb_155150_010 0.2107937388 - - kinase, putative [Ricinus communis]
16 Hb_009296_050 0.2114480369 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
17 Hb_053125_010 0.2120669527 - - PREDICTED: uncharacterized protein LOC104881508 [Vitis vinifera]
18 Hb_000757_020 0.2125284045 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
19 Hb_168180_010 0.2129013098 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003216_070 0.2134300367 - - hypothetical protein RCOM_0483300 [Ricinus communis]

Gene co-expression network

sample Hb_121992_010 Hb_121992_010 Hb_001304_130 Hb_001304_130 Hb_121992_010--Hb_001304_130 Hb_136880_010 Hb_136880_010 Hb_121992_010--Hb_136880_010 Hb_012788_010 Hb_012788_010 Hb_121992_010--Hb_012788_010 Hb_147218_010 Hb_147218_010 Hb_121992_010--Hb_147218_010 Hb_086336_010 Hb_086336_010 Hb_121992_010--Hb_086336_010 Hb_001485_010 Hb_001485_010 Hb_121992_010--Hb_001485_010 Hb_001304_130--Hb_147218_010 Hb_000875_070 Hb_000875_070 Hb_001304_130--Hb_000875_070 Hb_001304_130--Hb_086336_010 Hb_003216_070 Hb_003216_070 Hb_001304_130--Hb_003216_070 Hb_001486_060 Hb_001486_060 Hb_001304_130--Hb_001486_060 Hb_136880_010--Hb_001485_010 Hb_136880_010--Hb_012788_010 Hb_136880_010--Hb_001304_130 Hb_000383_020 Hb_000383_020 Hb_136880_010--Hb_000383_020 Hb_151706_010 Hb_151706_010 Hb_136880_010--Hb_151706_010 Hb_012788_010--Hb_001304_130 Hb_012788_010--Hb_001485_010 Hb_134279_010 Hb_134279_010 Hb_012788_010--Hb_134279_010 Hb_053125_010 Hb_053125_010 Hb_012788_010--Hb_053125_010 Hb_147218_010--Hb_086336_010 Hb_011032_010 Hb_011032_010 Hb_147218_010--Hb_011032_010 Hb_147218_010--Hb_000875_070 Hb_147218_010--Hb_001486_060 Hb_086336_010--Hb_001486_060 Hb_003371_190 Hb_003371_190 Hb_086336_010--Hb_003371_190 Hb_000818_080 Hb_000818_080 Hb_086336_010--Hb_000818_080 Hb_005288_210 Hb_005288_210 Hb_086336_010--Hb_005288_210 Hb_102011_010 Hb_102011_010 Hb_001485_010--Hb_102011_010 Hb_001485_010--Hb_053125_010 Hb_071160_010 Hb_071160_010 Hb_001485_010--Hb_071160_010 Hb_000233_100 Hb_000233_100 Hb_001485_010--Hb_000233_100 Hb_065500_010 Hb_065500_010 Hb_001485_010--Hb_065500_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.42463 6.99072 0.728626 5.69877 0.301958 2.20916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.75607 7.82902 8.20727

CAGE analysis