Hb_122025_010

Information

Type -
Description -
Location Contig122025: 1187-2902
Sequence    

Annotation

kegg
ID pop:POPTR_0003s052201
description hypothetical protein
nr
ID XP_006385464.1
description hypothetical protein POPTR_0003s052201g, partial [Populus trichocarpa]
swissprot
ID Q9C821
description Proline-rich receptor-like protein kinase PERK15 OS=Arabidopsis thaliana GN=PERK15 PE=2 SV=1
trembl
ID U5GLL7
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0003s052201g PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_122025_010 0.0 - - hypothetical protein POPTR_0003s052201g, partial [Populus trichocarpa]
2 Hb_106528_010 0.0556898174 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
3 Hb_005747_040 0.0557434959 - - PREDICTED: peroxidase N1-like, partial [Nicotiana sylvestris]
4 Hb_002551_010 0.0563128112 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000264_250 0.0589257387 - - thioredoxin family protein [Arabidopsis thaliana]
6 Hb_001114_290 0.0597379743 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000563_070 0.0631666279 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
8 Hb_005747_020 0.0677541241 - - bacterial-induced peroxidase [Gossypium schwendimanii]
9 Hb_173102_010 0.0685570257 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
10 Hb_001114_220 0.0765937542 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
11 Hb_094462_010 0.0796717596 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
12 Hb_002997_010 0.0800022048 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Malus domestica]
13 Hb_000537_120 0.0803958911 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
14 Hb_001410_090 0.0839287375 - - transferase, putative [Ricinus communis]
15 Hb_169426_010 0.0848318053 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_005780_010 0.0850514751 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
17 Hb_000419_080 0.0853696588 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
18 Hb_180483_010 0.0854916803 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_008367_020 0.0863039009 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 [Gossypium raimondii]
20 Hb_001032_060 0.0955865442 - - PREDICTED: ankyrin-2-like [Citrus sinensis]

Gene co-expression network

sample Hb_122025_010 Hb_122025_010 Hb_106528_010 Hb_106528_010 Hb_122025_010--Hb_106528_010 Hb_005747_040 Hb_005747_040 Hb_122025_010--Hb_005747_040 Hb_002551_010 Hb_002551_010 Hb_122025_010--Hb_002551_010 Hb_000264_250 Hb_000264_250 Hb_122025_010--Hb_000264_250 Hb_001114_290 Hb_001114_290 Hb_122025_010--Hb_001114_290 Hb_000563_070 Hb_000563_070 Hb_122025_010--Hb_000563_070 Hb_106528_010--Hb_005747_040 Hb_106528_010--Hb_002551_010 Hb_106528_010--Hb_001114_290 Hb_106528_010--Hb_000264_250 Hb_106528_010--Hb_000563_070 Hb_173102_010 Hb_173102_010 Hb_106528_010--Hb_173102_010 Hb_005747_040--Hb_002551_010 Hb_005747_040--Hb_001114_290 Hb_005747_040--Hb_000264_250 Hb_005747_040--Hb_000563_070 Hb_005747_040--Hb_173102_010 Hb_002551_010--Hb_000264_250 Hb_002551_010--Hb_000563_070 Hb_002551_010--Hb_001114_290 Hb_005747_020 Hb_005747_020 Hb_002551_010--Hb_005747_020 Hb_000264_250--Hb_000563_070 Hb_000264_250--Hb_005747_020 Hb_094462_010 Hb_094462_010 Hb_000264_250--Hb_094462_010 Hb_001114_290--Hb_173102_010 Hb_002997_010 Hb_002997_010 Hb_001114_290--Hb_002997_010 Hb_001114_290--Hb_000264_250 Hb_000563_070--Hb_005747_020 Hb_000563_070--Hb_094462_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.723186 0 0 0.0380384 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.38802 0

CAGE analysis