Hb_122028_010

Information

Type -
Description -
Location Contig122028: 135-953
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01952g
description hypothetical protein
nr
ID XP_006377206.1
description hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_122028_010 0.0 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
2 Hb_012090_020 0.2119777948 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 [Jatropha curcas]
3 Hb_017225_010 0.2302220174 - - PREDICTED: nodulation receptor kinase-like [Jatropha curcas]
4 Hb_032733_020 0.2303628589 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X4 [Citrus sinensis]
5 Hb_028872_020 0.2394964293 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
6 Hb_000914_190 0.2503261525 - - xanthine dehydrogenase, putative [Ricinus communis]
7 Hb_027654_010 0.251096983 - - Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]
8 Hb_001699_020 0.2568994337 - - hypothetical protein L484_026849 [Morus notabilis]
9 Hb_006970_010 0.2590565665 - - lipoxygenase, putative [Ricinus communis]
10 Hb_062192_020 0.259328797 - - cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]
11 Hb_170878_020 0.2612885653 - - -
12 Hb_012049_030 0.2619614753 - - RNA polymerase beta subunit [Hevea brasiliensis]
13 Hb_001221_350 0.2625525731 - - conserved hypothetical protein [Ricinus communis]
14 Hb_013420_060 0.2626611448 - - NADH dehydrogenase subunit 7 [Nymphaea sp. Bergthorsson 0401]
15 Hb_006474_010 0.264453194 - - hypothetical protein VITISV_032357 [Vitis vinifera]
16 Hb_015817_010 0.2651391056 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
17 Hb_087797_010 0.265238982 - - kinase, putative [Ricinus communis]
18 Hb_000172_620 0.2663465875 - - hypothetical protein VITISV_033646 [Vitis vinifera]
19 Hb_005029_030 0.2665254577 - - PREDICTED: LOW QUALITY PROTEIN: 36.4 kDa proline-rich protein-like [Sesamum indicum]
20 Hb_000135_080 0.2719500458 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_122028_010 Hb_122028_010 Hb_012090_020 Hb_012090_020 Hb_122028_010--Hb_012090_020 Hb_017225_010 Hb_017225_010 Hb_122028_010--Hb_017225_010 Hb_032733_020 Hb_032733_020 Hb_122028_010--Hb_032733_020 Hb_028872_020 Hb_028872_020 Hb_122028_010--Hb_028872_020 Hb_000914_190 Hb_000914_190 Hb_122028_010--Hb_000914_190 Hb_027654_010 Hb_027654_010 Hb_122028_010--Hb_027654_010 Hb_001390_080 Hb_001390_080 Hb_012090_020--Hb_001390_080 Hb_000628_010 Hb_000628_010 Hb_012090_020--Hb_000628_010 Hb_008643_050 Hb_008643_050 Hb_012090_020--Hb_008643_050 Hb_134546_010 Hb_134546_010 Hb_012090_020--Hb_134546_010 Hb_031866_030 Hb_031866_030 Hb_012090_020--Hb_031866_030 Hb_028248_010 Hb_028248_010 Hb_017225_010--Hb_028248_010 Hb_011716_120 Hb_011716_120 Hb_017225_010--Hb_011716_120 Hb_185839_010 Hb_185839_010 Hb_017225_010--Hb_185839_010 Hb_006474_010 Hb_006474_010 Hb_017225_010--Hb_006474_010 Hb_002760_020 Hb_002760_020 Hb_017225_010--Hb_002760_020 Hb_114271_010 Hb_114271_010 Hb_032733_020--Hb_114271_010 Hb_013420_060 Hb_013420_060 Hb_032733_020--Hb_013420_060 Hb_087797_010 Hb_087797_010 Hb_032733_020--Hb_087797_010 Hb_001691_170 Hb_001691_170 Hb_032733_020--Hb_001691_170 Hb_003333_040 Hb_003333_040 Hb_032733_020--Hb_003333_040 Hb_002005_050 Hb_002005_050 Hb_032733_020--Hb_002005_050 Hb_001221_350 Hb_001221_350 Hb_028872_020--Hb_001221_350 Hb_003462_170 Hb_003462_170 Hb_028872_020--Hb_003462_170 Hb_003183_010 Hb_003183_010 Hb_028872_020--Hb_003183_010 Hb_094484_010 Hb_094484_010 Hb_028872_020--Hb_094484_010 Hb_062192_050 Hb_062192_050 Hb_028872_020--Hb_062192_050 Hb_003427_040 Hb_003427_040 Hb_028872_020--Hb_003427_040 Hb_001377_210 Hb_001377_210 Hb_000914_190--Hb_001377_210 Hb_000092_060 Hb_000092_060 Hb_000914_190--Hb_000092_060 Hb_004242_200 Hb_004242_200 Hb_000914_190--Hb_004242_200 Hb_015978_090 Hb_015978_090 Hb_000914_190--Hb_015978_090 Hb_006915_010 Hb_006915_010 Hb_000914_190--Hb_006915_010 Hb_000011_440 Hb_000011_440 Hb_000914_190--Hb_000011_440 Hb_015817_010 Hb_015817_010 Hb_027654_010--Hb_015817_010 Hb_043935_010 Hb_043935_010 Hb_027654_010--Hb_043935_010 Hb_010381_080 Hb_010381_080 Hb_027654_010--Hb_010381_080 Hb_006147_020 Hb_006147_020 Hb_027654_010--Hb_006147_020 Hb_004392_030 Hb_004392_030 Hb_027654_010--Hb_004392_030 Hb_001699_020 Hb_001699_020 Hb_027654_010--Hb_001699_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0817163 0 0.100931 0.031143 0 0.0287407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0954928 0.585526

CAGE analysis