Hb_122079_010

Information

Type -
Description -
Location Contig122079: 1555-2468
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07680g
description POPTRDRAFT_551392; hypothetical protein
nr
ID XP_011027425.1
description PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A9PBA8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s07680g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_122079_010 0.0 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
2 Hb_000053_150 0.0259207877 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
3 Hb_010812_080 0.045946933 - - PREDICTED: methylesterase 17 [Jatropha curcas]
4 Hb_061335_010 0.0478780319 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
5 Hb_178968_010 0.0500453217 - - hypothetical protein JCGZ_15830 [Jatropha curcas]
6 Hb_005057_020 0.0536158181 - - PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]
7 Hb_000277_040 0.0730854305 - - -
8 Hb_004342_040 0.0751421533 - - PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Jatropha curcas]
9 Hb_003216_010 0.0761890068 - - glycosyl hydrolase family protein [Populus trichocarpa]
10 Hb_002186_120 0.0801507257 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X5 [Populus euphratica]
11 Hb_018671_010 0.080258597 - - -
12 Hb_012545_020 0.0907369876 - - PREDICTED: uncharacterized protein LOC105633903 [Jatropha curcas]
13 Hb_003540_010 0.0917219175 - - -
14 Hb_004137_090 0.0924860626 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
15 Hb_000099_110 0.0972746241 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
16 Hb_010608_040 0.1021197708 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
17 Hb_000696_120 0.1051786222 - - PREDICTED: protein FD [Populus euphratica]
18 Hb_000224_050 0.1054107027 - - conserved hypothetical protein [Ricinus communis]
19 Hb_157881_010 0.1069830224 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_000896_030 0.1098545072 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_122079_010 Hb_122079_010 Hb_000053_150 Hb_000053_150 Hb_122079_010--Hb_000053_150 Hb_010812_080 Hb_010812_080 Hb_122079_010--Hb_010812_080 Hb_061335_010 Hb_061335_010 Hb_122079_010--Hb_061335_010 Hb_178968_010 Hb_178968_010 Hb_122079_010--Hb_178968_010 Hb_005057_020 Hb_005057_020 Hb_122079_010--Hb_005057_020 Hb_000277_040 Hb_000277_040 Hb_122079_010--Hb_000277_040 Hb_000053_150--Hb_178968_010 Hb_000053_150--Hb_005057_020 Hb_018671_010 Hb_018671_010 Hb_000053_150--Hb_018671_010 Hb_002186_120 Hb_002186_120 Hb_000053_150--Hb_002186_120 Hb_000053_150--Hb_010812_080 Hb_012545_020 Hb_012545_020 Hb_010812_080--Hb_012545_020 Hb_010812_080--Hb_000277_040 Hb_000099_110 Hb_000099_110 Hb_010812_080--Hb_000099_110 Hb_010812_080--Hb_061335_010 Hb_004342_040 Hb_004342_040 Hb_061335_010--Hb_004342_040 Hb_061335_010--Hb_005057_020 Hb_157881_010 Hb_157881_010 Hb_061335_010--Hb_157881_010 Hb_061335_010--Hb_000053_150 Hb_003540_010 Hb_003540_010 Hb_178968_010--Hb_003540_010 Hb_178968_010--Hb_018671_010 Hb_003216_010 Hb_003216_010 Hb_178968_010--Hb_003216_010 Hb_178968_010--Hb_002186_120 Hb_005057_020--Hb_003216_010 Hb_005057_020--Hb_004342_040 Hb_000696_120 Hb_000696_120 Hb_005057_020--Hb_000696_120 Hb_005057_020--Hb_178968_010 Hb_000277_040--Hb_002186_120 Hb_000277_040--Hb_018671_010 Hb_000277_040--Hb_012545_020 Hb_000277_040--Hb_000099_110 Hb_000277_040--Hb_000053_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0254843 0.154354 0.807593 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis