Hb_122239_010

Information

Type -
Description -
Location Contig122239: 11367-15843
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13590g
description POPTRDRAFT_554451; leucine-rich repeat transmembrane protein kinase
nr
ID XP_012086772.1
description PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
swissprot
ID Q9SUQ3
description Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740 PE=2 SV=1
trembl
ID A0A067K0L5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20495 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable inactive receptor kinase at4g23740

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06787: 11129-11697 , PASA_asmbl_06788: 11129-11591 , PASA_asmbl_06789: 11739-12075 , PASA_asmbl_06790: 12693-12840 , PASA_asmbl_06791: 12856-15818
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_122239_010 0.0 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
2 Hb_012251_010 0.1074749864 - - -
3 Hb_003893_050 0.1180196528 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
4 Hb_002716_090 0.1209345389 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]
5 Hb_000029_200 0.1225272226 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
6 Hb_000699_160 0.1237206368 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
7 Hb_003641_020 0.1249794949 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
8 Hb_005063_050 0.1264743247 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
9 Hb_000046_560 0.1270988427 - - PREDICTED: uncharacterized protein LOC105118519 [Populus euphratica]
10 Hb_005496_030 0.1291980093 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
11 Hb_076626_010 0.1317092867 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001638_260 0.1330237081 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
13 Hb_000948_210 0.133276867 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
14 Hb_003203_040 0.1343892615 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
15 Hb_000283_110 0.1357243797 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
16 Hb_000045_250 0.136691344 - - PREDICTED: uncharacterized protein LOC105646572 isoform X1 [Jatropha curcas]
17 Hb_012368_020 0.1385135332 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
18 Hb_000574_160 0.1390227779 - - PREDICTED: arogenate dehydrogenase 2, chloroplastic [Jatropha curcas]
19 Hb_000617_090 0.1401231984 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
20 Hb_004223_040 0.1410476131 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_122239_010 Hb_122239_010 Hb_012251_010 Hb_012251_010 Hb_122239_010--Hb_012251_010 Hb_003893_050 Hb_003893_050 Hb_122239_010--Hb_003893_050 Hb_002716_090 Hb_002716_090 Hb_122239_010--Hb_002716_090 Hb_000029_200 Hb_000029_200 Hb_122239_010--Hb_000029_200 Hb_000699_160 Hb_000699_160 Hb_122239_010--Hb_000699_160 Hb_003641_020 Hb_003641_020 Hb_122239_010--Hb_003641_020 Hb_000045_250 Hb_000045_250 Hb_012251_010--Hb_000045_250 Hb_000203_020 Hb_000203_020 Hb_012251_010--Hb_000203_020 Hb_174865_010 Hb_174865_010 Hb_012251_010--Hb_174865_010 Hb_000948_220 Hb_000948_220 Hb_012251_010--Hb_000948_220 Hb_000915_120 Hb_000915_120 Hb_012251_010--Hb_000915_120 Hb_000042_260 Hb_000042_260 Hb_012251_010--Hb_000042_260 Hb_005063_050 Hb_005063_050 Hb_003893_050--Hb_005063_050 Hb_000283_110 Hb_000283_110 Hb_003893_050--Hb_000283_110 Hb_002431_050 Hb_002431_050 Hb_003893_050--Hb_002431_050 Hb_003203_040 Hb_003203_040 Hb_003893_050--Hb_003203_040 Hb_010672_060 Hb_010672_060 Hb_003893_050--Hb_010672_060 Hb_003893_050--Hb_000029_200 Hb_001247_350 Hb_001247_350 Hb_002716_090--Hb_001247_350 Hb_001638_260 Hb_001638_260 Hb_002716_090--Hb_001638_260 Hb_003927_140 Hb_003927_140 Hb_002716_090--Hb_003927_140 Hb_005496_030 Hb_005496_030 Hb_002716_090--Hb_005496_030 Hb_009554_010 Hb_009554_010 Hb_002716_090--Hb_009554_010 Hb_001214_140 Hb_001214_140 Hb_002716_090--Hb_001214_140 Hb_002864_050 Hb_002864_050 Hb_000029_200--Hb_002864_050 Hb_000510_110 Hb_000510_110 Hb_000029_200--Hb_000510_110 Hb_001314_100 Hb_001314_100 Hb_000029_200--Hb_001314_100 Hb_012573_070 Hb_012573_070 Hb_000029_200--Hb_012573_070 Hb_007416_030 Hb_007416_030 Hb_000029_200--Hb_007416_030 Hb_000699_160--Hb_010672_060 Hb_000699_160--Hb_005063_050 Hb_001221_310 Hb_001221_310 Hb_000699_160--Hb_001221_310 Hb_143496_010 Hb_143496_010 Hb_000699_160--Hb_143496_010 Hb_012022_120 Hb_012022_120 Hb_000699_160--Hb_012022_120 Hb_002830_020 Hb_002830_020 Hb_000699_160--Hb_002830_020 Hb_012368_020 Hb_012368_020 Hb_003641_020--Hb_012368_020 Hb_000062_650 Hb_000062_650 Hb_003641_020--Hb_000062_650 Hb_003641_020--Hb_001638_260 Hb_000438_220 Hb_000438_220 Hb_003641_020--Hb_000438_220 Hb_003641_020--Hb_001314_100 Hb_003641_020--Hb_012573_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7399 2.65993 6.86398 13.0163 9.35814 15.2637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.2955 54.1012 14.8167 2.20648 5.70216

CAGE analysis