Hb_122273_020

Information

Type transcription factor
Description TF Family: RWP-RK
Location Contig122273: 14640-20096
Sequence    

Annotation

kegg
ID rcu:RCOM_0512940
description hypothetical protein
nr
ID XP_012067164.1
description PREDICTED: protein NLP2 [Jatropha curcas]
swissprot
ID Q7X9B9
description Protein NLP2 OS=Arabidopsis thaliana GN=NLP2 PE=2 SV=3
trembl
ID A0A067L0N8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03094 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06795: 15739-16752 , PASA_asmbl_06796: 16807-17349 , PASA_asmbl_06797: 17544-17729
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_122273_020 0.0 transcription factor TF Family: RWP-RK PREDICTED: protein NLP2 [Jatropha curcas]
2 Hb_001054_120 0.1018174415 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
3 Hb_014720_030 0.102378686 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
4 Hb_000243_400 0.1086349929 - - PREDICTED: nucleolin-like [Jatropha curcas]
5 Hb_002918_320 0.1092417225 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
6 Hb_004875_010 0.1119160503 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
7 Hb_000413_250 0.1124753882 - - Cysteine-rich RLK 29 [Theobroma cacao]
8 Hb_003895_040 0.1150358696 - - hypothetical protein CISIN_1g0006512mg, partial [Citrus sinensis]
9 Hb_001646_010 0.1151383122 - - hypothetical protein JCGZ_16333 [Jatropha curcas]
10 Hb_000922_220 0.1166352788 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
11 Hb_002005_030 0.1187248394 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
12 Hb_000133_090 0.1219585193 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
13 Hb_000445_130 0.1232889478 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
14 Hb_000189_470 0.1233874947 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
15 Hb_006794_020 0.1251693316 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
16 Hb_011616_040 0.1263928992 - - glucan water dikinase 3, partial [Manihot esculenta]
17 Hb_001269_050 0.1270242208 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
18 Hb_011202_030 0.1276153796 - - arsenite-resistance protein, putative [Ricinus communis]
19 Hb_000008_410 0.1294071065 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
20 Hb_014497_020 0.1303670333 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]

Gene co-expression network

sample Hb_122273_020 Hb_122273_020 Hb_001054_120 Hb_001054_120 Hb_122273_020--Hb_001054_120 Hb_014720_030 Hb_014720_030 Hb_122273_020--Hb_014720_030 Hb_000243_400 Hb_000243_400 Hb_122273_020--Hb_000243_400 Hb_002918_320 Hb_002918_320 Hb_122273_020--Hb_002918_320 Hb_004875_010 Hb_004875_010 Hb_122273_020--Hb_004875_010 Hb_000413_250 Hb_000413_250 Hb_122273_020--Hb_000413_250 Hb_000367_020 Hb_000367_020 Hb_001054_120--Hb_000367_020 Hb_015183_080 Hb_015183_080 Hb_001054_120--Hb_015183_080 Hb_000358_220 Hb_000358_220 Hb_001054_120--Hb_000358_220 Hb_003895_040 Hb_003895_040 Hb_001054_120--Hb_003895_040 Hb_000003_410 Hb_000003_410 Hb_001054_120--Hb_000003_410 Hb_009476_120 Hb_009476_120 Hb_001054_120--Hb_009476_120 Hb_014720_030--Hb_004875_010 Hb_001226_110 Hb_001226_110 Hb_014720_030--Hb_001226_110 Hb_001269_050 Hb_001269_050 Hb_014720_030--Hb_001269_050 Hb_001103_090 Hb_001103_090 Hb_014720_030--Hb_001103_090 Hb_005000_090 Hb_005000_090 Hb_014720_030--Hb_005000_090 Hb_004586_090 Hb_004586_090 Hb_000243_400--Hb_004586_090 Hb_000133_090 Hb_000133_090 Hb_000243_400--Hb_000133_090 Hb_000200_110 Hb_000200_110 Hb_000243_400--Hb_000200_110 Hb_000243_400--Hb_000413_250 Hb_143629_020 Hb_143629_020 Hb_000243_400--Hb_143629_020 Hb_006794_020 Hb_006794_020 Hb_000243_400--Hb_006794_020 Hb_008686_020 Hb_008686_020 Hb_002918_320--Hb_008686_020 Hb_002918_320--Hb_000413_250 Hb_005765_040 Hb_005765_040 Hb_002918_320--Hb_005765_040 Hb_004696_070 Hb_004696_070 Hb_002918_320--Hb_004696_070 Hb_001951_100 Hb_001951_100 Hb_002918_320--Hb_001951_100 Hb_001561_010 Hb_001561_010 Hb_002918_320--Hb_001561_010 Hb_000922_220 Hb_000922_220 Hb_004875_010--Hb_000922_220 Hb_000649_270 Hb_000649_270 Hb_004875_010--Hb_000649_270 Hb_002005_030 Hb_002005_030 Hb_004875_010--Hb_002005_030 Hb_005772_030 Hb_005772_030 Hb_004875_010--Hb_005772_030 Hb_000413_250--Hb_004696_070 Hb_000413_250--Hb_001951_100 Hb_000413_250--Hb_000133_090 Hb_000331_100 Hb_000331_100 Hb_000413_250--Hb_000331_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.63518 10.9901 4.51725 4.74029 3.64962 3.76192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.775168 0.300007 1.30337 7.5468 8.78809

CAGE analysis