Hb_122548_010

Information

Type -
Description -
Location Contig122548: 1961-2534
Sequence    

Annotation

kegg
ID rcu:RCOM_0554440
description acyl-CoA oxidase, putative (EC:1.9.3.1)
nr
ID XP_002525155.1
description acyl-CoA oxidase, putative [Ricinus communis]
swissprot
ID P0CZ24
description Putative acyl-coenzyme A oxidase At3g06690 OS=Arabidopsis thaliana GN=At3g06690 PE=3 SV=1
trembl
ID B9SGN6
description Acyl-coenzyme A oxidase OS=Ricinus communis GN=RCOM_0554440 PE=3 SV=1
Gene Ontology
ID GO:0005777
description acyl-coenzyme a oxidase peroxisomal-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_122548_010 0.0 - - acyl-CoA oxidase, putative [Ricinus communis]
2 Hb_002983_080 0.07765524 - - acetylornithine aminotransferase, partial [Prunus persica]
3 Hb_015026_130 0.085887002 - - quinone oxidoreductase, putative [Ricinus communis]
4 Hb_006502_030 0.0891007094 - - PREDICTED: probable kinetochore protein ndc80 [Jatropha curcas]
5 Hb_001405_210 0.1009514644 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
6 Hb_000120_550 0.1059587028 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
7 Hb_004055_050 0.1059675304 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
8 Hb_000236_490 0.1061775574 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
9 Hb_004544_040 0.1090262014 - - hypothetical protein PHAVU_010G103000g [Phaseolus vulgaris]
10 Hb_001114_110 0.1108431949 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
11 Hb_000333_110 0.1109363513 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001141_310 0.1109577617 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
13 Hb_007062_040 0.1113878064 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
14 Hb_000331_090 0.1118810983 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
15 Hb_004586_060 0.1138682648 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
16 Hb_005381_020 0.115147661 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]
17 Hb_000962_030 0.1161155359 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
18 Hb_000046_570 0.1163237322 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
19 Hb_001366_090 0.1168865289 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
20 Hb_146081_010 0.1172612468 - - PREDICTED: protein SCAI [Jatropha curcas]

Gene co-expression network

sample Hb_122548_010 Hb_122548_010 Hb_002983_080 Hb_002983_080 Hb_122548_010--Hb_002983_080 Hb_015026_130 Hb_015026_130 Hb_122548_010--Hb_015026_130 Hb_006502_030 Hb_006502_030 Hb_122548_010--Hb_006502_030 Hb_001405_210 Hb_001405_210 Hb_122548_010--Hb_001405_210 Hb_000120_550 Hb_000120_550 Hb_122548_010--Hb_000120_550 Hb_004055_050 Hb_004055_050 Hb_122548_010--Hb_004055_050 Hb_002983_080--Hb_001405_210 Hb_002983_080--Hb_015026_130 Hb_004102_170 Hb_004102_170 Hb_002983_080--Hb_004102_170 Hb_005381_020 Hb_005381_020 Hb_002983_080--Hb_005381_020 Hb_000046_570 Hb_000046_570 Hb_002983_080--Hb_000046_570 Hb_000089_180 Hb_000089_180 Hb_015026_130--Hb_000089_180 Hb_000085_450 Hb_000085_450 Hb_015026_130--Hb_000085_450 Hb_001114_110 Hb_001114_110 Hb_015026_130--Hb_001114_110 Hb_004128_130 Hb_004128_130 Hb_015026_130--Hb_004128_130 Hb_001141_310 Hb_001141_310 Hb_015026_130--Hb_001141_310 Hb_001258_110 Hb_001258_110 Hb_015026_130--Hb_001258_110 Hb_006502_030--Hb_015026_130 Hb_006468_010 Hb_006468_010 Hb_006502_030--Hb_006468_010 Hb_003020_100 Hb_003020_100 Hb_006502_030--Hb_003020_100 Hb_006502_030--Hb_001114_110 Hb_006006_040 Hb_006006_040 Hb_006502_030--Hb_006006_040 Hb_007248_030 Hb_007248_030 Hb_001405_210--Hb_007248_030 Hb_001405_210--Hb_000046_570 Hb_007062_040 Hb_007062_040 Hb_001405_210--Hb_007062_040 Hb_001856_180 Hb_001856_180 Hb_001405_210--Hb_001856_180 Hb_086063_020 Hb_086063_020 Hb_001405_210--Hb_086063_020 Hb_004586_060 Hb_004586_060 Hb_001405_210--Hb_004586_060 Hb_032990_010 Hb_032990_010 Hb_000120_550--Hb_032990_010 Hb_003897_040 Hb_003897_040 Hb_000120_550--Hb_003897_040 Hb_161994_030 Hb_161994_030 Hb_000120_550--Hb_161994_030 Hb_000737_030 Hb_000737_030 Hb_000120_550--Hb_000737_030 Hb_000579_070 Hb_000579_070 Hb_000120_550--Hb_000579_070 Hb_116349_060 Hb_116349_060 Hb_000120_550--Hb_116349_060 Hb_000622_110 Hb_000622_110 Hb_004055_050--Hb_000622_110 Hb_001250_050 Hb_001250_050 Hb_004055_050--Hb_001250_050 Hb_005535_080 Hb_005535_080 Hb_004055_050--Hb_005535_080 Hb_081599_010 Hb_081599_010 Hb_004055_050--Hb_081599_010 Hb_003777_030 Hb_003777_030 Hb_004055_050--Hb_003777_030 Hb_000665_170 Hb_000665_170 Hb_004055_050--Hb_000665_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.39152 10.6837 12.2188 19.5138 6.65035 9.64363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.74708 8.89125 3.95627 14.8692 5.11746

CAGE analysis