Hb_122567_010

Information

Type -
Description -
Location Contig122567: 2154-4024
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_122567_010 0.0 - - -
2 Hb_049014_010 0.1492499922 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
3 Hb_000656_130 0.1558963155 - - hypothetical protein PRUPE_ppa026157mg, partial [Prunus persica]
4 Hb_075481_010 0.1581709839 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
5 Hb_000454_020 0.1581793273 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_142068_020 0.1586072071 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
7 Hb_178389_010 0.1737208945 - - PREDICTED: U-box domain-containing protein 15-like isoform X2 [Jatropha curcas]
8 Hb_002498_200 0.192499376 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
9 Hb_011909_090 0.223362837 transcription factor TF Family: NOZZLE PREDICTED: uncharacterized protein LOC105633212 [Jatropha curcas]
10 Hb_019654_120 0.2310418079 - - PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Jatropha curcas]
11 Hb_005539_320 0.2462662761 - - PREDICTED: pumilio homolog 15-like [Vitis vinifera]
12 Hb_005671_030 0.2576068615 - - -
13 Hb_001178_120 0.2577974527 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
14 Hb_187661_010 0.2611065337 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
15 Hb_001676_030 0.2701443599 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_001604_110 0.2831972281 - - -
17 Hb_005539_300 0.2973338996 - - PREDICTED: deacetoxyvindoline 4-hydroxylase-like [Populus euphratica]
18 Hb_008891_020 0.3014612706 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
19 Hb_056305_010 0.3015282041 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_002257_070 0.3018138285 - - hypothetical protein, partial [Pseudomonas fluorescens]

Gene co-expression network

sample Hb_122567_010 Hb_122567_010 Hb_049014_010 Hb_049014_010 Hb_122567_010--Hb_049014_010 Hb_000656_130 Hb_000656_130 Hb_122567_010--Hb_000656_130 Hb_075481_010 Hb_075481_010 Hb_122567_010--Hb_075481_010 Hb_000454_020 Hb_000454_020 Hb_122567_010--Hb_000454_020 Hb_142068_020 Hb_142068_020 Hb_122567_010--Hb_142068_020 Hb_178389_010 Hb_178389_010 Hb_122567_010--Hb_178389_010 Hb_049014_010--Hb_075481_010 Hb_049014_010--Hb_000656_130 Hb_049014_010--Hb_000454_020 Hb_049014_010--Hb_142068_020 Hb_005671_030 Hb_005671_030 Hb_049014_010--Hb_005671_030 Hb_000656_130--Hb_000454_020 Hb_000656_130--Hb_142068_020 Hb_000656_130--Hb_075481_010 Hb_187661_010 Hb_187661_010 Hb_000656_130--Hb_187661_010 Hb_075481_010--Hb_000454_020 Hb_075481_010--Hb_142068_020 Hb_002498_200 Hb_002498_200 Hb_075481_010--Hb_002498_200 Hb_000454_020--Hb_142068_020 Hb_000454_020--Hb_187661_010 Hb_142068_020--Hb_187661_010 Hb_019654_120 Hb_019654_120 Hb_178389_010--Hb_019654_120 Hb_178389_010--Hb_000656_130 Hb_178389_010--Hb_000454_020 Hb_178389_010--Hb_142068_020 Hb_001676_030 Hb_001676_030 Hb_178389_010--Hb_001676_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.94888 0 0 0 0.160106 0.636362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis