Hb_122873_010

Information

Type -
Description -
Location Contig122873: 5647-8215
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_122873_010 0.0 - - -
2 Hb_038098_010 0.1025041522 - - PREDICTED: uncharacterized protein LOC105793140 [Gossypium raimondii]
3 Hb_114435_010 0.1381140165 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_002257_020 0.1717980188 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
5 Hb_049415_010 0.274415151 - - -
6 Hb_005520_020 0.276426797 - - hypothetical protein EUGRSUZ_G03336 [Eucalyptus grandis]
7 Hb_116293_020 0.2765583615 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
8 Hb_004724_350 0.285054653 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009449_010 0.2853237547 - - Serine/threonine-protein kinase HT1 [Gossypium arboreum]
10 Hb_012725_010 0.2895569426 - - -
11 Hb_001268_100 0.2899500539 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
12 Hb_000122_240 0.2989031125 - - monovalent cation:proton antiporter, putative [Ricinus communis]
13 Hb_002608_020 0.3050254391 transcription factor TF Family: MYB PREDICTED: myb-related protein 305 [Jatropha curcas]
14 Hb_000260_150 0.3172156262 - - hypothetical protein POPTR_0344s002001g, partial [Populus trichocarpa]
15 Hb_016859_010 0.3239231655 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_187136_010 0.352407629 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
17 Hb_107500_010 0.3543802129 - - -
18 Hb_098988_010 0.3833603022 - - hypothetical protein JCGZ_18539 [Jatropha curcas]
19 Hb_000152_310 0.3964157766 - - -
20 Hb_001638_010 0.3973759603 - - -

Gene co-expression network

sample Hb_122873_010 Hb_122873_010 Hb_038098_010 Hb_038098_010 Hb_122873_010--Hb_038098_010 Hb_114435_010 Hb_114435_010 Hb_122873_010--Hb_114435_010 Hb_002257_020 Hb_002257_020 Hb_122873_010--Hb_002257_020 Hb_049415_010 Hb_049415_010 Hb_122873_010--Hb_049415_010 Hb_005520_020 Hb_005520_020 Hb_122873_010--Hb_005520_020 Hb_116293_020 Hb_116293_020 Hb_122873_010--Hb_116293_020 Hb_038098_010--Hb_114435_010 Hb_038098_010--Hb_002257_020 Hb_004724_350 Hb_004724_350 Hb_038098_010--Hb_004724_350 Hb_000122_240 Hb_000122_240 Hb_038098_010--Hb_000122_240 Hb_012725_010 Hb_012725_010 Hb_038098_010--Hb_012725_010 Hb_114435_010--Hb_002257_020 Hb_114435_010--Hb_000122_240 Hb_002608_020 Hb_002608_020 Hb_114435_010--Hb_002608_020 Hb_000260_150 Hb_000260_150 Hb_114435_010--Hb_000260_150 Hb_002257_020--Hb_002608_020 Hb_002257_020--Hb_000122_240 Hb_001437_020 Hb_001437_020 Hb_002257_020--Hb_001437_020 Hb_049415_010--Hb_005520_020 Hb_049415_010--Hb_116293_020 Hb_009449_010 Hb_009449_010 Hb_049415_010--Hb_009449_010 Hb_049415_010--Hb_012725_010 Hb_016859_010 Hb_016859_010 Hb_049415_010--Hb_016859_010 Hb_187136_010 Hb_187136_010 Hb_049415_010--Hb_187136_010 Hb_005520_020--Hb_116293_020 Hb_005520_020--Hb_009449_010 Hb_005520_020--Hb_012725_010 Hb_005520_020--Hb_016859_010 Hb_005520_020--Hb_187136_010 Hb_116293_020--Hb_009449_010 Hb_116293_020--Hb_012725_010 Hb_116293_020--Hb_016859_010 Hb_116293_020--Hb_187136_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0980276 0 0 0 0.0512998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.210189 0 0 0

CAGE analysis