Hb_122911_010

Information

Type -
Description -
Location Contig122911: 4642-6100
Sequence    

Annotation

kegg
ID rcu:RCOM_1080980
description NADH-ubiquinone oxidoreductase flavoprotein, putative (EC:1.6.99.3)
nr
ID XP_012085644.1
description PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
swissprot
ID Q9FNN5
description NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Arabidopsis thaliana GN=At5g08530 PE=2 SV=1
trembl
ID A0A067K3F8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17933 PE=4 SV=1
Gene Ontology
ID GO:0000166
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_122911_010 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
2 Hb_000045_270 0.0056868766 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002342_040 0.0072036307 - - FERONIA, partial [Arabis alpina]
4 Hb_010452_030 0.0083791505 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
5 Hb_001100_020 0.0096970896 - - -
6 Hb_002400_110 0.0148779938 - - conserved hypothetical protein [Ricinus communis]
7 Hb_072149_010 0.0151200959 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
8 Hb_004944_030 0.0168182033 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
9 Hb_005426_010 0.017589414 - - polyprotein [Oryza australiensis]
10 Hb_001136_140 0.0176709491 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
11 Hb_007592_010 0.0177435826 - - PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
12 Hb_008092_010 0.0198898545 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
13 Hb_003702_020 0.0203336498 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
14 Hb_000370_050 0.0203691765 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
15 Hb_042239_010 0.0246464518 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
16 Hb_048653_010 0.0259087646 - - PREDICTED: mavicyanin [Jatropha curcas]
17 Hb_013654_020 0.0260509984 - - putative prolin-rich extensin-like receptor protein kinase family protein [Zea mays]
18 Hb_039814_010 0.0284410897 - - hypothetical protein JCGZ_05023 [Jatropha curcas]
19 Hb_008221_010 0.0296862716 - - hypothetical protein JCGZ_10961 [Jatropha curcas]
20 Hb_188168_010 0.030552433 - - Arylacetamide deacetylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_122911_010 Hb_122911_010 Hb_000045_270 Hb_000045_270 Hb_122911_010--Hb_000045_270 Hb_002342_040 Hb_002342_040 Hb_122911_010--Hb_002342_040 Hb_010452_030 Hb_010452_030 Hb_122911_010--Hb_010452_030 Hb_001100_020 Hb_001100_020 Hb_122911_010--Hb_001100_020 Hb_002400_110 Hb_002400_110 Hb_122911_010--Hb_002400_110 Hb_072149_010 Hb_072149_010 Hb_122911_010--Hb_072149_010 Hb_000045_270--Hb_010452_030 Hb_000045_270--Hb_001100_020 Hb_000045_270--Hb_002400_110 Hb_000045_270--Hb_072149_010 Hb_004944_030 Hb_004944_030 Hb_000045_270--Hb_004944_030 Hb_005426_010 Hb_005426_010 Hb_002342_040--Hb_005426_010 Hb_007592_010 Hb_007592_010 Hb_002342_040--Hb_007592_010 Hb_008092_010 Hb_008092_010 Hb_002342_040--Hb_008092_010 Hb_002342_040--Hb_000045_270 Hb_003702_020 Hb_003702_020 Hb_002342_040--Hb_003702_020 Hb_010452_030--Hb_001100_020 Hb_010452_030--Hb_002400_110 Hb_010452_030--Hb_072149_010 Hb_010452_030--Hb_004944_030 Hb_001100_020--Hb_002400_110 Hb_001100_020--Hb_072149_010 Hb_001100_020--Hb_004944_030 Hb_001136_140 Hb_001136_140 Hb_001100_020--Hb_001136_140 Hb_002400_110--Hb_072149_010 Hb_002400_110--Hb_004944_030 Hb_002400_110--Hb_001136_140 Hb_072149_010--Hb_004944_030 Hb_072149_010--Hb_001136_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0338205 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0133094 0

CAGE analysis