Hb_123056_010

Information

Type -
Description -
Location Contig123056: 2655-3621
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123056_010 0.0 - - -
2 Hb_001703_100 0.0337066597 - - PREDICTED: uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris]
3 Hb_002269_010 0.0403986951 - - PREDICTED: WAT1-related protein At4g15540-like [Jatropha curcas]
4 Hb_007586_010 0.0439082518 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
5 Hb_005269_010 0.0715757001 - - -
6 Hb_000894_050 0.0969478008 - - -
7 Hb_096257_010 0.0976904202 - - -
8 Hb_180003_010 0.1068512066 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
9 Hb_030449_010 0.1079235078 - - -
10 Hb_021470_010 0.114224897 - - polyprotein [Citrus endogenous pararetrovirus]
11 Hb_004409_010 0.118265325 - - -
12 Hb_141990_060 0.120616579 - - -
13 Hb_003206_040 0.1215046752 - - Auxin efflux carrier component, putative [Ricinus communis]
14 Hb_010531_060 0.1254817208 - - hypothetical protein B456_010G209400, partial [Gossypium raimondii]
15 Hb_023024_010 0.1707401057 - - PREDICTED: uncharacterized protein LOC105767094 [Gossypium raimondii]
16 Hb_011113_020 0.239169246 - - hypothetical protein CICLE_v10018209mg [Citrus clementina]
17 Hb_082219_010 0.2513900537 - - Os03g0264300, partial [Oryza sativa Japonica Group]
18 Hb_178817_010 0.2607935439 - - protease [Gossypium hirsutum]
19 Hb_003673_030 0.2635791423 - - hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
20 Hb_000188_030 0.2806144127 - - carboxylic ester hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_123056_010 Hb_123056_010 Hb_001703_100 Hb_001703_100 Hb_123056_010--Hb_001703_100 Hb_002269_010 Hb_002269_010 Hb_123056_010--Hb_002269_010 Hb_007586_010 Hb_007586_010 Hb_123056_010--Hb_007586_010 Hb_005269_010 Hb_005269_010 Hb_123056_010--Hb_005269_010 Hb_000894_050 Hb_000894_050 Hb_123056_010--Hb_000894_050 Hb_096257_010 Hb_096257_010 Hb_123056_010--Hb_096257_010 Hb_001703_100--Hb_002269_010 Hb_001703_100--Hb_005269_010 Hb_001703_100--Hb_007586_010 Hb_010531_060 Hb_010531_060 Hb_001703_100--Hb_010531_060 Hb_001703_100--Hb_000894_050 Hb_002269_010--Hb_005269_010 Hb_002269_010--Hb_007586_010 Hb_002269_010--Hb_010531_060 Hb_023024_010 Hb_023024_010 Hb_002269_010--Hb_023024_010 Hb_007586_010--Hb_000894_050 Hb_007586_010--Hb_096257_010 Hb_180003_010 Hb_180003_010 Hb_007586_010--Hb_180003_010 Hb_030449_010 Hb_030449_010 Hb_007586_010--Hb_030449_010 Hb_021470_010 Hb_021470_010 Hb_007586_010--Hb_021470_010 Hb_005269_010--Hb_010531_060 Hb_005269_010--Hb_023024_010 Hb_005269_010--Hb_007586_010 Hb_000894_050--Hb_096257_010 Hb_000894_050--Hb_180003_010 Hb_000894_050--Hb_030449_010 Hb_000894_050--Hb_021470_010 Hb_004409_010 Hb_004409_010 Hb_000894_050--Hb_004409_010 Hb_141990_060 Hb_141990_060 Hb_000894_050--Hb_141990_060 Hb_096257_010--Hb_180003_010 Hb_096257_010--Hb_030449_010 Hb_096257_010--Hb_021470_010 Hb_096257_010--Hb_004409_010 Hb_096257_010--Hb_141990_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.729672 1.0379 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis