Hb_123199_010

Information

Type -
Description -
Location Contig123199: 86-613
Sequence    

Annotation

kegg
ID pper:PRUPE_ppb012406mg
description hypothetical protein
nr
ID ACN52053.1
description SRK protein [Brassica cretica]
swissprot
ID Q94A06
description Mitogen-activated protein kinase kinase 1 OS=Arabidopsis thaliana GN=MKK1 PE=1 SV=2
trembl
ID C0L9C4
description SRK protein (Fragment) OS=Brassica cretica PE=4 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase rks1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07045: 37-432
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123199_010 0.0 - - SRK protein [Brassica cretica]
2 Hb_023936_010 0.216752999 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000950_070 0.2176382681 - - PREDICTED: uncharacterized protein LOC105645259 isoform X2 [Jatropha curcas]
4 Hb_002972_010 0.2204443234 - - PREDICTED: magnesium-dependent phosphatase 1 [Jatropha curcas]
5 Hb_000011_570 0.220816057 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
6 Hb_001712_070 0.2224783005 - - PREDICTED: HD domain-containing protein 2 [Jatropha curcas]
7 Hb_000008_370 0.225303266 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
8 Hb_000186_270 0.233117992 - - hypothetical protein JCGZ_02112 [Jatropha curcas]
9 Hb_002471_250 0.2415329815 - - Tapt1/CMV receptor, putative isoform 2 [Theobroma cacao]
10 Hb_027792_010 0.2452155878 - - -
11 Hb_000676_140 0.246149685 - - structural constituent of ribosome, putative [Ricinus communis]
12 Hb_000568_060 0.2538820538 - - PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
13 Hb_011330_020 0.2547141844 transcription factor TF Family: ARID transcription factor, putative [Ricinus communis]
14 Hb_000094_340 0.2564252761 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
15 Hb_001799_110 0.2564263322 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X2 [Jatropha curcas]
16 Hb_000185_050 0.2573505919 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
17 Hb_000390_090 0.2596387917 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
18 Hb_000134_320 0.2603237483 - - hypothetical protein PRUPE_ppa013450mg [Prunus persica]
19 Hb_000866_240 0.2611409405 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
20 Hb_002713_080 0.2625020819 - - glycine-rich RNA-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_123199_010 Hb_123199_010 Hb_023936_010 Hb_023936_010 Hb_123199_010--Hb_023936_010 Hb_000950_070 Hb_000950_070 Hb_123199_010--Hb_000950_070 Hb_002972_010 Hb_002972_010 Hb_123199_010--Hb_002972_010 Hb_000011_570 Hb_000011_570 Hb_123199_010--Hb_000011_570 Hb_001712_070 Hb_001712_070 Hb_123199_010--Hb_001712_070 Hb_000008_370 Hb_000008_370 Hb_123199_010--Hb_000008_370 Hb_000085_350 Hb_000085_350 Hb_023936_010--Hb_000085_350 Hb_023936_010--Hb_000011_570 Hb_001096_090 Hb_001096_090 Hb_023936_010--Hb_001096_090 Hb_001377_450 Hb_001377_450 Hb_023936_010--Hb_001377_450 Hb_000185_050 Hb_000185_050 Hb_023936_010--Hb_000185_050 Hb_001073_080 Hb_001073_080 Hb_023936_010--Hb_001073_080 Hb_002471_250 Hb_002471_250 Hb_000950_070--Hb_002471_250 Hb_001396_210 Hb_001396_210 Hb_000950_070--Hb_001396_210 Hb_000215_090 Hb_000215_090 Hb_000950_070--Hb_000215_090 Hb_027792_010 Hb_027792_010 Hb_000950_070--Hb_027792_010 Hb_001517_050 Hb_001517_050 Hb_000950_070--Hb_001517_050 Hb_158144_010 Hb_158144_010 Hb_000950_070--Hb_158144_010 Hb_001056_030 Hb_001056_030 Hb_002972_010--Hb_001056_030 Hb_001114_160 Hb_001114_160 Hb_002972_010--Hb_001114_160 Hb_003556_030 Hb_003556_030 Hb_002972_010--Hb_003556_030 Hb_002972_010--Hb_001712_070 Hb_000390_090 Hb_000390_090 Hb_002972_010--Hb_000390_090 Hb_000413_060 Hb_000413_060 Hb_002972_010--Hb_000413_060 Hb_000676_140 Hb_000676_140 Hb_000011_570--Hb_000676_140 Hb_000866_240 Hb_000866_240 Hb_000011_570--Hb_000866_240 Hb_001016_150 Hb_001016_150 Hb_000011_570--Hb_001016_150 Hb_004709_010 Hb_004709_010 Hb_000011_570--Hb_004709_010 Hb_000011_570--Hb_000185_050 Hb_014720_040 Hb_014720_040 Hb_000011_570--Hb_014720_040 Hb_001712_070--Hb_000185_050 Hb_000690_190 Hb_000690_190 Hb_001712_070--Hb_000690_190 Hb_002307_180 Hb_002307_180 Hb_001712_070--Hb_002307_180 Hb_015299_030 Hb_015299_030 Hb_001712_070--Hb_015299_030 Hb_001712_070--Hb_000215_090 Hb_001712_070--Hb_000390_090 Hb_000035_240 Hb_000035_240 Hb_000008_370--Hb_000035_240 Hb_000008_370--Hb_000390_090 Hb_009252_060 Hb_009252_060 Hb_000008_370--Hb_009252_060 Hb_001301_340 Hb_001301_340 Hb_000008_370--Hb_001301_340 Hb_001450_030 Hb_001450_030 Hb_000008_370--Hb_001450_030 Hb_068194_010 Hb_068194_010 Hb_000008_370--Hb_068194_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.492935 0.359793 2.2558 0.547344 0.0774775 1.06114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.778411 2.90422 0 0.784085 0.809316

CAGE analysis