Hb_123352_020

Information

Type -
Description -
Location Contig123352: 11624-15630
Sequence    

Annotation

kegg
ID tcc:TCM_000967
description Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1
nr
ID XP_012081691.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
swissprot
ID Q9LSL9
description Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
trembl
ID A0A067KC30
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18725 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at5g65560

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07100: 13495-14173
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123352_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
2 Hb_001143_160 0.0398781146 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
3 Hb_000487_290 0.0516266341 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
4 Hb_007163_090 0.0565084609 - - PREDICTED: protein spt2-like [Jatropha curcas]
5 Hb_000225_040 0.0572581099 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
6 Hb_005731_030 0.0598421968 - - PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]
7 Hb_000457_260 0.0621969767 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
8 Hb_002025_020 0.0622120519 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
9 Hb_010618_010 0.0632327972 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
10 Hb_007576_110 0.0637164744 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
11 Hb_000820_170 0.0668937762 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
12 Hb_001226_030 0.0672847967 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 [Jatropha curcas]
13 Hb_004724_060 0.0677941091 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
14 Hb_001248_060 0.0684071303 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000011_200 0.0689860077 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
16 Hb_000173_490 0.0694976153 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
17 Hb_000123_210 0.0696403975 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
18 Hb_001409_020 0.0696557415 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
19 Hb_000343_120 0.0705899332 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
20 Hb_001680_010 0.0708362611 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]

Gene co-expression network

sample Hb_123352_020 Hb_123352_020 Hb_001143_160 Hb_001143_160 Hb_123352_020--Hb_001143_160 Hb_000487_290 Hb_000487_290 Hb_123352_020--Hb_000487_290 Hb_007163_090 Hb_007163_090 Hb_123352_020--Hb_007163_090 Hb_000225_040 Hb_000225_040 Hb_123352_020--Hb_000225_040 Hb_005731_030 Hb_005731_030 Hb_123352_020--Hb_005731_030 Hb_000457_260 Hb_000457_260 Hb_123352_020--Hb_000457_260 Hb_000123_210 Hb_000123_210 Hb_001143_160--Hb_000123_210 Hb_001143_160--Hb_007163_090 Hb_001143_160--Hb_000225_040 Hb_001493_030 Hb_001493_030 Hb_001143_160--Hb_001493_030 Hb_000011_200 Hb_000011_200 Hb_001143_160--Hb_000011_200 Hb_005188_050 Hb_005188_050 Hb_000487_290--Hb_005188_050 Hb_000827_070 Hb_000827_070 Hb_000487_290--Hb_000827_070 Hb_000487_290--Hb_005731_030 Hb_000025_360 Hb_000025_360 Hb_000487_290--Hb_000025_360 Hb_004724_060 Hb_004724_060 Hb_000487_290--Hb_004724_060 Hb_001226_030 Hb_001226_030 Hb_007163_090--Hb_001226_030 Hb_001301_200 Hb_001301_200 Hb_007163_090--Hb_001301_200 Hb_000207_390 Hb_000207_390 Hb_007163_090--Hb_000207_390 Hb_000577_010 Hb_000577_010 Hb_007163_090--Hb_000577_010 Hb_001797_050 Hb_001797_050 Hb_007163_090--Hb_001797_050 Hb_000225_040--Hb_000011_200 Hb_003158_010 Hb_003158_010 Hb_000225_040--Hb_003158_010 Hb_167498_010 Hb_167498_010 Hb_000225_040--Hb_167498_010 Hb_010618_010 Hb_010618_010 Hb_000225_040--Hb_010618_010 Hb_000193_190 Hb_000193_190 Hb_000225_040--Hb_000193_190 Hb_000329_470 Hb_000329_470 Hb_000225_040--Hb_000329_470 Hb_010222_050 Hb_010222_050 Hb_005731_030--Hb_010222_050 Hb_003029_110 Hb_003029_110 Hb_005731_030--Hb_003029_110 Hb_000820_170 Hb_000820_170 Hb_005731_030--Hb_000820_170 Hb_002518_280 Hb_002518_280 Hb_005731_030--Hb_002518_280 Hb_005731_030--Hb_010618_010 Hb_000347_180 Hb_000347_180 Hb_000457_260--Hb_000347_180 Hb_004935_030 Hb_004935_030 Hb_000457_260--Hb_004935_030 Hb_003362_070 Hb_003362_070 Hb_000457_260--Hb_003362_070 Hb_172632_080 Hb_172632_080 Hb_000457_260--Hb_172632_080 Hb_001700_040 Hb_001700_040 Hb_000457_260--Hb_001700_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.71731 2.76106 1.3419 1.76095 3.09078 3.80824
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.30846 2.09018 2.84886 2.49518 1.51875

CAGE analysis