Hb_123475_010

Information

Type -
Description -
Location Contig123475: 9013-17441
Sequence    

Annotation

kegg
ID rcu:RCOM_0708220
description zinc finger protein, putative
nr
ID XP_012077151.1
description PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
swissprot
ID P40343
description Vacuolar protein sorting-associated protein 27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS27 PE=1 SV=3
trembl
ID A0A067KQ91
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07565 PE=4 SV=1
Gene Ontology
ID GO:0046872
description hepatocyte growth factor-regulated tyrosine kinase substrate

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07140: 9023-17444 , PASA_asmbl_07141: 16392-17444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123475_010 0.0 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
2 Hb_061908_010 0.0652492354 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
3 Hb_000169_010 0.0750183432 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
4 Hb_001124_210 0.0750441349 - - conserved hypothetical protein [Ricinus communis]
5 Hb_185830_020 0.0766863468 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_004223_090 0.0792273189 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X2 [Jatropha curcas]
7 Hb_000956_030 0.0822923117 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
8 Hb_000997_060 0.0824985031 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
9 Hb_000012_090 0.0829688702 - - 3'-5' exonuclease, putative [Ricinus communis]
10 Hb_002232_170 0.0843296789 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
11 Hb_000236_370 0.0859695779 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
12 Hb_003777_270 0.0873754727 - - 60S ribosomal protein L3B [Hevea brasiliensis]
13 Hb_003656_130 0.088141049 - - PREDICTED: protein bem46 isoform X2 [Jatropha curcas]
14 Hb_009118_010 0.0886931176 - - methionine aminopeptidase, putative [Ricinus communis]
15 Hb_000300_280 0.0888897787 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
16 Hb_001009_040 0.0902317804 - - PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
17 Hb_003602_040 0.0905423571 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
18 Hb_003392_040 0.0909629431 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
19 Hb_028639_060 0.0912819713 - - transporter, putative [Ricinus communis]
20 Hb_000032_570 0.0914890662 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]

Gene co-expression network

sample Hb_123475_010 Hb_123475_010 Hb_061908_010 Hb_061908_010 Hb_123475_010--Hb_061908_010 Hb_000169_010 Hb_000169_010 Hb_123475_010--Hb_000169_010 Hb_001124_210 Hb_001124_210 Hb_123475_010--Hb_001124_210 Hb_185830_020 Hb_185830_020 Hb_123475_010--Hb_185830_020 Hb_004223_090 Hb_004223_090 Hb_123475_010--Hb_004223_090 Hb_000956_030 Hb_000956_030 Hb_123475_010--Hb_000956_030 Hb_061908_010--Hb_000956_030 Hb_001158_220 Hb_001158_220 Hb_061908_010--Hb_001158_220 Hb_000120_500 Hb_000120_500 Hb_061908_010--Hb_000120_500 Hb_002475_160 Hb_002475_160 Hb_061908_010--Hb_002475_160 Hb_001009_040 Hb_001009_040 Hb_061908_010--Hb_001009_040 Hb_003392_040 Hb_003392_040 Hb_000169_010--Hb_003392_040 Hb_000720_120 Hb_000720_120 Hb_000169_010--Hb_000720_120 Hb_005539_030 Hb_005539_030 Hb_000169_010--Hb_005539_030 Hb_007254_040 Hb_007254_040 Hb_000169_010--Hb_007254_040 Hb_000032_570 Hb_000032_570 Hb_000169_010--Hb_000032_570 Hb_001135_050 Hb_001135_050 Hb_000169_010--Hb_001135_050 Hb_003847_080 Hb_003847_080 Hb_001124_210--Hb_003847_080 Hb_141131_010 Hb_141131_010 Hb_001124_210--Hb_141131_010 Hb_002078_150 Hb_002078_150 Hb_001124_210--Hb_002078_150 Hb_158092_070 Hb_158092_070 Hb_001124_210--Hb_158092_070 Hb_000363_500 Hb_000363_500 Hb_001124_210--Hb_000363_500 Hb_185830_020--Hb_003847_080 Hb_010691_060 Hb_010691_060 Hb_185830_020--Hb_010691_060 Hb_002982_040 Hb_002982_040 Hb_185830_020--Hb_002982_040 Hb_185830_020--Hb_000956_030 Hb_000103_180 Hb_000103_180 Hb_185830_020--Hb_000103_180 Hb_022250_130 Hb_022250_130 Hb_185830_020--Hb_022250_130 Hb_003777_270 Hb_003777_270 Hb_004223_090--Hb_003777_270 Hb_000923_020 Hb_000923_020 Hb_004223_090--Hb_000923_020 Hb_000099_240 Hb_000099_240 Hb_004223_090--Hb_000099_240 Hb_000057_200 Hb_000057_200 Hb_004223_090--Hb_000057_200 Hb_039946_020 Hb_039946_020 Hb_004223_090--Hb_039946_020 Hb_003159_080 Hb_003159_080 Hb_004223_090--Hb_003159_080 Hb_004198_010 Hb_004198_010 Hb_000956_030--Hb_004198_010 Hb_003434_060 Hb_003434_060 Hb_000956_030--Hb_003434_060 Hb_000956_030--Hb_000120_500 Hb_002097_090 Hb_002097_090 Hb_000956_030--Hb_002097_090 Hb_004450_010 Hb_004450_010 Hb_000956_030--Hb_004450_010 Hb_000236_370 Hb_000236_370 Hb_000956_030--Hb_000236_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.7388 22.7375 13.2516 25.5632 60.6103 91.8849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.8863 46.1036 34.4734 40.0073 7.26497

CAGE analysis