Hb_123531_010

Information

Type -
Description -
Location Contig123531: 8428-20872
Sequence    

Annotation

kegg
ID vvi:100249633
description nuclear pore complex protein NUP98A
nr
ID XP_012086568.1
description PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
swissprot
ID Q8RY25
description Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana GN=NUP98A PE=1 SV=1
trembl
ID A0A067JMH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20337 PE=4 SV=1
Gene Ontology
ID GO:0005643
description nuclear pore complex protein nup98a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07189: 8540-19881 , PASA_asmbl_07190: 10989-11186
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123531_010 0.0 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
2 Hb_002007_110 0.0525254839 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
3 Hb_007245_020 0.0529390145 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
4 Hb_000934_210 0.0534549689 - - suppressor of ty, putative [Ricinus communis]
5 Hb_000331_580 0.055711699 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
6 Hb_002357_070 0.0562044735 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
7 Hb_000172_340 0.0595116897 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
8 Hb_006031_010 0.0602699453 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
9 Hb_012055_110 0.0642312576 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
10 Hb_011174_020 0.0643723619 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
11 Hb_006531_020 0.0661615448 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
12 Hb_001951_170 0.0664266402 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
13 Hb_012244_020 0.0668823014 - - calpain, putative [Ricinus communis]
14 Hb_005832_010 0.0684666255 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
15 Hb_000066_150 0.0694795778 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
16 Hb_000363_300 0.0695031628 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
17 Hb_000317_100 0.070117315 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
18 Hb_005215_010 0.0703084593 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
19 Hb_000003_100 0.0706260556 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
20 Hb_027472_220 0.0707381478 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_123531_010 Hb_123531_010 Hb_002007_110 Hb_002007_110 Hb_123531_010--Hb_002007_110 Hb_007245_020 Hb_007245_020 Hb_123531_010--Hb_007245_020 Hb_000934_210 Hb_000934_210 Hb_123531_010--Hb_000934_210 Hb_000331_580 Hb_000331_580 Hb_123531_010--Hb_000331_580 Hb_002357_070 Hb_002357_070 Hb_123531_010--Hb_002357_070 Hb_000172_340 Hb_000172_340 Hb_123531_010--Hb_000172_340 Hb_012055_110 Hb_012055_110 Hb_002007_110--Hb_012055_110 Hb_005832_010 Hb_005832_010 Hb_002007_110--Hb_005832_010 Hb_002007_110--Hb_000331_580 Hb_000066_150 Hb_000066_150 Hb_002007_110--Hb_000066_150 Hb_006031_010 Hb_006031_010 Hb_002007_110--Hb_006031_010 Hb_007245_020--Hb_002357_070 Hb_006478_030 Hb_006478_030 Hb_007245_020--Hb_006478_030 Hb_007245_020--Hb_000172_340 Hb_060980_010 Hb_060980_010 Hb_007245_020--Hb_060980_010 Hb_000103_290 Hb_000103_290 Hb_007245_020--Hb_000103_290 Hb_027472_220 Hb_027472_220 Hb_000934_210--Hb_027472_220 Hb_012244_020 Hb_012244_020 Hb_000934_210--Hb_012244_020 Hb_000934_210--Hb_002007_110 Hb_000934_210--Hb_002357_070 Hb_000958_050 Hb_000958_050 Hb_000934_210--Hb_000958_050 Hb_000008_240 Hb_000008_240 Hb_000331_580--Hb_000008_240 Hb_000003_100 Hb_000003_100 Hb_000331_580--Hb_000003_100 Hb_005568_040 Hb_005568_040 Hb_000331_580--Hb_005568_040 Hb_006531_020 Hb_006531_020 Hb_000331_580--Hb_006531_020 Hb_001221_180 Hb_001221_180 Hb_002357_070--Hb_001221_180 Hb_000318_150 Hb_000318_150 Hb_002357_070--Hb_000318_150 Hb_002357_070--Hb_012055_110 Hb_001904_030 Hb_001904_030 Hb_000172_340--Hb_001904_030 Hb_000172_340--Hb_005832_010 Hb_002005_030 Hb_002005_030 Hb_000172_340--Hb_002005_030 Hb_000172_340--Hb_000066_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3609 28.7444 14.8525 21.9409 16.3611 16.3952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1725 8.72837 9.74057 25.8496 28.1318

CAGE analysis