Hb_123689_010

Information

Type -
Description -
Location Contig123689: 8998-13489
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08160g
description POPTRDRAFT_557612; calcineurin-like phosphoesterase family protein
nr
ID XP_012078596.1
description PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
swissprot
ID Q944L7
description Uncharacterized protein At1g18480 OS=Arabidopsis thaliana GN=At1g18480 PE=2 SV=1
trembl
ID A0A067LBK1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17354 PE=4 SV=1
Gene Ontology
ID GO:0005618
description calcineurin-like phosphoesterase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07222: 8994-13493 , PASA_asmbl_07224: 11926-12142
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123689_010 0.0 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
2 Hb_029622_060 0.0731348138 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
3 Hb_002534_090 0.0847381511 - - geranylgeranyl reductase [Hevea brasiliensis]
4 Hb_000009_470 0.0915048779 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
5 Hb_011344_030 0.0917880438 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
6 Hb_007044_020 0.0924775276 - - unnamed protein product [Vitis vinifera]
7 Hb_001269_480 0.0930588244 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
8 Hb_000221_130 0.0947130907 - - thylakoid lumenal 29 kDa protein, chloroplastic [Jatropha curcas]
9 Hb_003171_040 0.0953918311 - - multidrug resistance pump, putative [Ricinus communis]
10 Hb_001691_180 0.0964766976 - - phosphoglycerate mutase, putative [Ricinus communis]
11 Hb_001310_020 0.0987648772 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
12 Hb_000076_070 0.0989141063 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
13 Hb_002289_070 0.0998493851 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
14 Hb_023344_040 0.1006743957 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003053_080 0.102064345 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002413_050 0.1030080643 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
17 Hb_001191_060 0.1072395812 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
18 Hb_011381_120 0.1072464515 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
19 Hb_000186_160 0.1076781212 - - hypothetical protein POPTR_0011s01120g [Populus trichocarpa]
20 Hb_002818_130 0.1078769687 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_123689_010 Hb_123689_010 Hb_029622_060 Hb_029622_060 Hb_123689_010--Hb_029622_060 Hb_002534_090 Hb_002534_090 Hb_123689_010--Hb_002534_090 Hb_000009_470 Hb_000009_470 Hb_123689_010--Hb_000009_470 Hb_011344_030 Hb_011344_030 Hb_123689_010--Hb_011344_030 Hb_007044_020 Hb_007044_020 Hb_123689_010--Hb_007044_020 Hb_001269_480 Hb_001269_480 Hb_123689_010--Hb_001269_480 Hb_002413_050 Hb_002413_050 Hb_029622_060--Hb_002413_050 Hb_003787_030 Hb_003787_030 Hb_029622_060--Hb_003787_030 Hb_010697_020 Hb_010697_020 Hb_029622_060--Hb_010697_020 Hb_002301_070 Hb_002301_070 Hb_029622_060--Hb_002301_070 Hb_000815_120 Hb_000815_120 Hb_029622_060--Hb_000815_120 Hb_002289_070 Hb_002289_070 Hb_002534_090--Hb_002289_070 Hb_002534_090--Hb_002413_050 Hb_001517_060 Hb_001517_060 Hb_002534_090--Hb_001517_060 Hb_011537_130 Hb_011537_130 Hb_002534_090--Hb_011537_130 Hb_002534_090--Hb_000009_470 Hb_011381_120 Hb_011381_120 Hb_002534_090--Hb_011381_120 Hb_000009_470--Hb_011344_030 Hb_000009_470--Hb_001517_060 Hb_004631_020 Hb_004631_020 Hb_000009_470--Hb_004631_020 Hb_000009_470--Hb_007044_020 Hb_004712_230 Hb_004712_230 Hb_000009_470--Hb_004712_230 Hb_023344_040 Hb_023344_040 Hb_011344_030--Hb_023344_040 Hb_000111_460 Hb_000111_460 Hb_011344_030--Hb_000111_460 Hb_001135_170 Hb_001135_170 Hb_011344_030--Hb_001135_170 Hb_011344_030--Hb_007044_020 Hb_000992_090 Hb_000992_090 Hb_011344_030--Hb_000992_090 Hb_000221_130 Hb_000221_130 Hb_007044_020--Hb_000221_130 Hb_003053_080 Hb_003053_080 Hb_007044_020--Hb_003053_080 Hb_010812_030 Hb_010812_030 Hb_007044_020--Hb_010812_030 Hb_007044_020--Hb_001269_480 Hb_001191_060 Hb_001191_060 Hb_001269_480--Hb_001191_060 Hb_002818_130 Hb_002818_130 Hb_001269_480--Hb_002818_130 Hb_001310_020 Hb_001310_020 Hb_001269_480--Hb_001310_020 Hb_001269_480--Hb_000221_130 Hb_001348_160 Hb_001348_160 Hb_001269_480--Hb_001348_160 Hb_086022_020 Hb_086022_020 Hb_001269_480--Hb_086022_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0118585 2.43302 29.0285 17.5047 0.0118785 0.259017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.296818 0.615669 1.48253 1.41289 103.062

CAGE analysis