Hb_123763_010

Information

Type -
Description -
Location Contig123763: 1826-2158
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24910g
description POPTRDRAFT_561699; hypothetical protein
nr
ID XP_012077327.1
description PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
swissprot
ID Q9UQ35
description Serine/arginine repetitive matrix protein 2 OS=Homo sapiens GN=SRRM2 PE=1 SV=2
trembl
ID A0A067KD23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07697 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123763_010 0.0 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
2 Hb_156503_040 0.1918576313 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
3 Hb_005714_050 0.2474827363 transcription factor TF Family: B3 hypothetical protein POPTR_1461s00200g [Populus trichocarpa]
4 Hb_002228_090 0.2568179909 - - hypothetical protein POPTR_0006s23560g [Populus trichocarpa]
5 Hb_069022_010 0.2582323003 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000398_030 0.259319606 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000975_270 0.2622631303 - - PREDICTED: histone H2B.11-like [Phoenix dactylifera]
8 Hb_000025_440 0.2788377073 - - PREDICTED: ankyrin repeat-containing protein P16F5.05c-like [Populus euphratica]
9 Hb_001017_080 0.278918102 - - hypothetical protein POPTR_0010s06020g [Populus trichocarpa]
10 Hb_001799_040 0.281421079 - - -
11 Hb_002918_300 0.2914169851 - - -
12 Hb_175450_010 0.2975306198 - - -
13 Hb_000270_730 0.2987491684 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
14 Hb_109578_010 0.2988979634 - - conserved hypothetical protein [Ricinus communis]
15 Hb_081207_010 0.3040689471 - - hypothetical protein JCGZ_17195 [Jatropha curcas]
16 Hb_000373_300 0.3057127494 - - hypothetical protein F775_20382 [Aegilops tauschii]
17 Hb_004048_010 0.3058166927 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
18 Hb_002431_060 0.3078433502 - - -
19 Hb_000500_210 0.3135538955 - - -
20 Hb_000184_190 0.3140495911 - - hypothetical protein VITISV_016970 [Vitis vinifera]

Gene co-expression network

sample Hb_123763_010 Hb_123763_010 Hb_156503_040 Hb_156503_040 Hb_123763_010--Hb_156503_040 Hb_005714_050 Hb_005714_050 Hb_123763_010--Hb_005714_050 Hb_002228_090 Hb_002228_090 Hb_123763_010--Hb_002228_090 Hb_069022_010 Hb_069022_010 Hb_123763_010--Hb_069022_010 Hb_000398_030 Hb_000398_030 Hb_123763_010--Hb_000398_030 Hb_000975_270 Hb_000975_270 Hb_123763_010--Hb_000975_270 Hb_001017_080 Hb_001017_080 Hb_156503_040--Hb_001017_080 Hb_000025_440 Hb_000025_440 Hb_156503_040--Hb_000025_440 Hb_182005_010 Hb_182005_010 Hb_156503_040--Hb_182005_010 Hb_109578_010 Hb_109578_010 Hb_156503_040--Hb_109578_010 Hb_156503_040--Hb_069022_010 Hb_032974_010 Hb_032974_010 Hb_005714_050--Hb_032974_010 Hb_005714_050--Hb_000975_270 Hb_005714_050--Hb_069022_010 Hb_000111_230 Hb_000111_230 Hb_005714_050--Hb_000111_230 Hb_005714_050--Hb_000025_440 Hb_005714_050--Hb_156503_040 Hb_081207_010 Hb_081207_010 Hb_002228_090--Hb_081207_010 Hb_175450_010 Hb_175450_010 Hb_002228_090--Hb_175450_010 Hb_000184_190 Hb_000184_190 Hb_002228_090--Hb_000184_190 Hb_000445_220 Hb_000445_220 Hb_002228_090--Hb_000445_220 Hb_006922_040 Hb_006922_040 Hb_002228_090--Hb_006922_040 Hb_002259_050 Hb_002259_050 Hb_002228_090--Hb_002259_050 Hb_000445_190 Hb_000445_190 Hb_069022_010--Hb_000445_190 Hb_069022_010--Hb_032974_010 Hb_000099_230 Hb_000099_230 Hb_069022_010--Hb_000099_230 Hb_069022_010--Hb_000975_270 Hb_069022_010--Hb_000111_230 Hb_000270_730 Hb_000270_730 Hb_000398_030--Hb_000270_730 Hb_001922_080 Hb_001922_080 Hb_000398_030--Hb_001922_080 Hb_001799_040 Hb_001799_040 Hb_000398_030--Hb_001799_040 Hb_001842_080 Hb_001842_080 Hb_000398_030--Hb_001842_080 Hb_000032_350 Hb_000032_350 Hb_000398_030--Hb_000032_350 Hb_001373_100 Hb_001373_100 Hb_000398_030--Hb_001373_100 Hb_000975_270--Hb_032974_010 Hb_186158_010 Hb_186158_010 Hb_000975_270--Hb_186158_010 Hb_011224_040 Hb_011224_040 Hb_000975_270--Hb_011224_040 Hb_000046_200 Hb_000046_200 Hb_000975_270--Hb_000046_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.3533 3.85318 1.73879 36.6361 16.4764 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
95.7028 266.585 0 0 0

CAGE analysis