Hb_123915_040

Information

Type -
Description -
Location Contig123915: 15766-31231
Sequence    

Annotation

kegg
ID pop:POPTR_0012s02880g
description POPTRDRAFT_569617; transducin family protein
nr
ID XP_012072048.1
description PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L1B4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05799 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07244: 17547-19929 , PASA_asmbl_07245: 20125-26730 , PASA_asmbl_07246: 24161-24679
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123915_040 0.0 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
2 Hb_000417_130 0.0385460885 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
3 Hb_000317_470 0.0576797201 - - PREDICTED: CCR4-NOT transcription complex subunit 11 [Jatropha curcas]
4 Hb_004254_090 0.0577400607 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
5 Hb_001357_250 0.0578183699 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
6 Hb_000905_110 0.0601970536 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
7 Hb_001021_150 0.0623910208 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
8 Hb_000035_470 0.0626955001 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
9 Hb_021419_030 0.0627646607 - - hypothetical protein glysoja_023295 [Glycine soja]
10 Hb_033642_090 0.0662453379 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006831_140 0.0674829972 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
12 Hb_002592_060 0.0682064311 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000816_250 0.0695105775 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
14 Hb_001318_280 0.0711288756 - - Protein FAM18B, putative [Ricinus communis]
15 Hb_000696_230 0.0725532589 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
16 Hb_008847_030 0.0726492456 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
17 Hb_001357_350 0.0731146732 - - conserved hypothetical protein [Ricinus communis]
18 Hb_156279_020 0.0731870792 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
19 Hb_005000_170 0.073722024 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
20 Hb_013399_020 0.0739888971 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_123915_040 Hb_123915_040 Hb_000417_130 Hb_000417_130 Hb_123915_040--Hb_000417_130 Hb_000317_470 Hb_000317_470 Hb_123915_040--Hb_000317_470 Hb_004254_090 Hb_004254_090 Hb_123915_040--Hb_004254_090 Hb_001357_250 Hb_001357_250 Hb_123915_040--Hb_001357_250 Hb_000905_110 Hb_000905_110 Hb_123915_040--Hb_000905_110 Hb_001021_150 Hb_001021_150 Hb_123915_040--Hb_001021_150 Hb_000417_130--Hb_001357_250 Hb_001357_350 Hb_001357_350 Hb_000417_130--Hb_001357_350 Hb_001268_240 Hb_001268_240 Hb_000417_130--Hb_001268_240 Hb_000035_470 Hb_000035_470 Hb_000417_130--Hb_000035_470 Hb_063716_100 Hb_063716_100 Hb_000417_130--Hb_063716_100 Hb_032986_010 Hb_032986_010 Hb_000317_470--Hb_032986_010 Hb_000522_170 Hb_000522_170 Hb_000317_470--Hb_000522_170 Hb_003163_020 Hb_003163_020 Hb_000317_470--Hb_003163_020 Hb_007416_300 Hb_007416_300 Hb_000317_470--Hb_007416_300 Hb_002272_130 Hb_002272_130 Hb_000317_470--Hb_002272_130 Hb_000138_100 Hb_000138_100 Hb_004254_090--Hb_000138_100 Hb_002592_060 Hb_002592_060 Hb_004254_090--Hb_002592_060 Hb_007479_040 Hb_007479_040 Hb_004254_090--Hb_007479_040 Hb_004846_220 Hb_004846_220 Hb_004254_090--Hb_004846_220 Hb_002518_260 Hb_002518_260 Hb_004254_090--Hb_002518_260 Hb_033642_090 Hb_033642_090 Hb_001357_250--Hb_033642_090 Hb_004410_030 Hb_004410_030 Hb_001357_250--Hb_004410_030 Hb_000907_110 Hb_000907_110 Hb_001357_250--Hb_000907_110 Hb_001357_250--Hb_063716_100 Hb_000336_210 Hb_000336_210 Hb_000905_110--Hb_000336_210 Hb_008847_030 Hb_008847_030 Hb_000905_110--Hb_008847_030 Hb_000905_110--Hb_001021_150 Hb_014834_150 Hb_014834_150 Hb_000905_110--Hb_014834_150 Hb_021419_030 Hb_021419_030 Hb_000905_110--Hb_021419_030 Hb_001021_150--Hb_002592_060 Hb_001021_150--Hb_008847_030 Hb_001946_400 Hb_001946_400 Hb_001021_150--Hb_001946_400 Hb_001021_150--Hb_000035_470 Hb_006831_140 Hb_006831_140 Hb_001021_150--Hb_006831_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.57398 2.9785 4.51157 3.86373 5.12854 3.88106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.27094 4.62982 3.76118 4.88326 3.53654

CAGE analysis