Hb_123915_050

Information

Type -
Description -
Location Contig123915: 35478-36595
Sequence    

Annotation

kegg
ID egr:104417116
description uncharacterized protein At4g02000-like
nr
ID KJB13963.1
description hypothetical protein B456_002G103400 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2NKU7
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G103400 PE=4 SV=1
Gene Ontology
ID GO:0005488
description kinesin-4 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123915_050 0.0 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
2 Hb_179763_020 0.107296001 - - -
3 Hb_000463_050 0.2645089392 - - histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
4 Hb_002188_100 0.2664696964 - - conserved hypothetical protein [Ricinus communis]
5 Hb_024828_040 0.270673563 - - -
6 Hb_000454_030 0.279726469 - - -
7 Hb_165078_010 0.285719315 - - -
8 Hb_024505_030 0.2916730792 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
9 Hb_002153_010 0.2971470553 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
10 Hb_000563_220 0.2980859918 - - hypothetical protein VITISV_004111 [Vitis vinifera]
11 Hb_182310_010 0.3129214124 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
12 Hb_000563_280 0.3147417375 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
13 Hb_050286_020 0.3177663006 - - -
14 Hb_083569_010 0.3210240826 - - -
15 Hb_007904_190 0.3219534918 - - -
16 Hb_000175_530 0.3245108986 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
17 Hb_003666_010 0.326721226 - - hypothetical protein JCGZ_12303 [Jatropha curcas]
18 Hb_001668_030 0.3276895139 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002081_100 0.327898494 - - -
20 Hb_001775_040 0.3301289549 - - -

Gene co-expression network

sample Hb_123915_050 Hb_123915_050 Hb_179763_020 Hb_179763_020 Hb_123915_050--Hb_179763_020 Hb_000463_050 Hb_000463_050 Hb_123915_050--Hb_000463_050 Hb_002188_100 Hb_002188_100 Hb_123915_050--Hb_002188_100 Hb_024828_040 Hb_024828_040 Hb_123915_050--Hb_024828_040 Hb_000454_030 Hb_000454_030 Hb_123915_050--Hb_000454_030 Hb_165078_010 Hb_165078_010 Hb_123915_050--Hb_165078_010 Hb_000227_030 Hb_000227_030 Hb_179763_020--Hb_000227_030 Hb_179763_020--Hb_002188_100 Hb_000563_220 Hb_000563_220 Hb_179763_020--Hb_000563_220 Hb_039635_010 Hb_039635_010 Hb_179763_020--Hb_039635_010 Hb_179763_020--Hb_000463_050 Hb_024505_030 Hb_024505_030 Hb_000463_050--Hb_024505_030 Hb_000463_050--Hb_002188_100 Hb_001922_040 Hb_001922_040 Hb_000463_050--Hb_001922_040 Hb_002081_100 Hb_002081_100 Hb_000463_050--Hb_002081_100 Hb_000612_070 Hb_000612_070 Hb_000463_050--Hb_000612_070 Hb_004375_060 Hb_004375_060 Hb_000463_050--Hb_004375_060 Hb_002188_100--Hb_024505_030 Hb_002153_010 Hb_002153_010 Hb_002188_100--Hb_002153_010 Hb_002188_100--Hb_001922_040 Hb_000329_530 Hb_000329_530 Hb_002188_100--Hb_000329_530 Hb_162999_010 Hb_162999_010 Hb_002188_100--Hb_162999_010 Hb_166786_030 Hb_166786_030 Hb_024828_040--Hb_166786_030 Hb_003859_010 Hb_003859_010 Hb_024828_040--Hb_003859_010 Hb_075812_010 Hb_075812_010 Hb_024828_040--Hb_075812_010 Hb_001565_100 Hb_001565_100 Hb_024828_040--Hb_001565_100 Hb_004534_020 Hb_004534_020 Hb_024828_040--Hb_004534_020 Hb_000816_110 Hb_000816_110 Hb_024828_040--Hb_000816_110 Hb_000175_530 Hb_000175_530 Hb_000454_030--Hb_000175_530 Hb_000580_060 Hb_000580_060 Hb_000454_030--Hb_000580_060 Hb_000441_230 Hb_000441_230 Hb_000454_030--Hb_000441_230 Hb_001146_070 Hb_001146_070 Hb_000454_030--Hb_001146_070 Hb_000329_540 Hb_000329_540 Hb_000454_030--Hb_000329_540 Hb_003226_170 Hb_003226_170 Hb_000454_030--Hb_003226_170 Hb_057746_010 Hb_057746_010 Hb_165078_010--Hb_057746_010 Hb_105484_010 Hb_105484_010 Hb_165078_010--Hb_105484_010 Hb_050286_020 Hb_050286_020 Hb_165078_010--Hb_050286_020 Hb_000831_040 Hb_000831_040 Hb_165078_010--Hb_000831_040 Hb_098842_010 Hb_098842_010 Hb_165078_010--Hb_098842_010 Hb_004317_050 Hb_004317_050 Hb_165078_010--Hb_004317_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0494103 0 0 0 0.046325 0.106335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0445715 0 0 0

CAGE analysis