Hb_124055_010

Information

Type -
Description -
Location Contig124055: 2934-3254
Sequence    

Annotation

kegg
ID rcu:RCOM_0644380
description mitochondrial inner membrane protease subunit, putative
nr
ID XP_002528106.1
description mitochondrial inner membrane protease subunit, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SQ38
description Mitochondrial inner membrane protease subunit, putative OS=Ricinus communis GN=RCOM_0644380 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial inner membrane protease subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124055_010 0.0 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
2 Hb_097007_010 0.1338410451 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
3 Hb_004125_110 0.1354339614 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
4 Hb_000272_050 0.1390838122 - - hypothetical protein JCGZ_03991 [Jatropha curcas]
5 Hb_021924_010 0.1393386649 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
6 Hb_001488_400 0.139397733 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
7 Hb_000236_460 0.1425457135 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
8 Hb_000915_120 0.1442107151 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
9 Hb_000045_250 0.1460828403 - - PREDICTED: uncharacterized protein LOC105646572 isoform X1 [Jatropha curcas]
10 Hb_003226_220 0.1462820757 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
11 Hb_000617_090 0.1467210765 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
12 Hb_012251_010 0.1470233528 - - -
13 Hb_001214_140 0.1472610537 - - 60S ribosomal protein L27a, putative [Ricinus communis]
14 Hb_001951_270 0.1518557799 - - -
15 Hb_026398_010 0.1535752557 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
16 Hb_003638_080 0.1537859212 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
17 Hb_187083_010 0.1539992541 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
18 Hb_004007_180 0.1550136377 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
19 Hb_002716_090 0.1553554143 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]
20 Hb_003226_210 0.1568104845 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]

Gene co-expression network

sample Hb_124055_010 Hb_124055_010 Hb_097007_010 Hb_097007_010 Hb_124055_010--Hb_097007_010 Hb_004125_110 Hb_004125_110 Hb_124055_010--Hb_004125_110 Hb_000272_050 Hb_000272_050 Hb_124055_010--Hb_000272_050 Hb_021924_010 Hb_021924_010 Hb_124055_010--Hb_021924_010 Hb_001488_400 Hb_001488_400 Hb_124055_010--Hb_001488_400 Hb_000236_460 Hb_000236_460 Hb_124055_010--Hb_000236_460 Hb_097007_010--Hb_000236_460 Hb_003549_020 Hb_003549_020 Hb_097007_010--Hb_003549_020 Hb_002320_060 Hb_002320_060 Hb_097007_010--Hb_002320_060 Hb_026398_010 Hb_026398_010 Hb_097007_010--Hb_026398_010 Hb_011311_010 Hb_011311_010 Hb_097007_010--Hb_011311_010 Hb_000085_330 Hb_000085_330 Hb_097007_010--Hb_000085_330 Hb_003018_050 Hb_003018_050 Hb_004125_110--Hb_003018_050 Hb_003226_210 Hb_003226_210 Hb_004125_110--Hb_003226_210 Hb_001214_160 Hb_001214_160 Hb_004125_110--Hb_001214_160 Hb_000997_120 Hb_000997_120 Hb_004125_110--Hb_000997_120 Hb_000134_070 Hb_000134_070 Hb_004125_110--Hb_000134_070 Hb_002660_030 Hb_002660_030 Hb_004125_110--Hb_002660_030 Hb_001221_310 Hb_001221_310 Hb_000272_050--Hb_001221_310 Hb_003226_220 Hb_003226_220 Hb_000272_050--Hb_003226_220 Hb_000042_260 Hb_000042_260 Hb_000272_050--Hb_000042_260 Hb_019516_100 Hb_019516_100 Hb_000272_050--Hb_019516_100 Hb_000212_210 Hb_000212_210 Hb_000272_050--Hb_000212_210 Hb_000272_050--Hb_026398_010 Hb_000975_180 Hb_000975_180 Hb_021924_010--Hb_000975_180 Hb_021924_010--Hb_001488_400 Hb_023732_060 Hb_023732_060 Hb_021924_010--Hb_023732_060 Hb_004755_030 Hb_004755_030 Hb_021924_010--Hb_004755_030 Hb_021924_010--Hb_003226_220 Hb_003988_040 Hb_003988_040 Hb_021924_010--Hb_003988_040 Hb_001488_400--Hb_000975_180 Hb_001488_400--Hb_003226_220 Hb_001488_400--Hb_000272_050 Hb_001488_400--Hb_000212_210 Hb_000236_460--Hb_003549_020 Hb_187083_010 Hb_187083_010 Hb_000236_460--Hb_187083_010 Hb_021409_090 Hb_021409_090 Hb_000236_460--Hb_021409_090 Hb_000236_460--Hb_000085_330 Hb_001123_120 Hb_001123_120 Hb_000236_460--Hb_001123_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.1225 12.7205 12.3051 47.4225 11.3712 39.5072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.2798 154.022 33.4983 12.5876 1.54953

CAGE analysis