Hb_124207_010

Information

Type -
Description -
Location Contig124207: 241-866
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q5XF57
description Probable receptor-like serine/threonine-protein kinase At5g57670 OS=Arabidopsis thaliana GN=At5g57670 PE=2 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124207_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000291_020 0.0376060034 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
3 Hb_012553_010 0.0588218211 - - hypothetical protein JCGZ_10552 [Jatropha curcas]
4 Hb_002787_100 0.0624604506 - - PREDICTED: uncharacterized protein LOC105637209 [Jatropha curcas]
5 Hb_166257_010 0.0941021396 - - hypothetical protein JCGZ_21808 [Jatropha curcas]
6 Hb_000523_060 0.0988540491 - - -
7 Hb_001268_070 0.1140319851 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000510_350 0.1312317962 - - Putative polyprotein [Oryza sativa Japonica Group]
9 Hb_000070_140 0.1367287906 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
10 Hb_000878_150 0.1439818498 - - Gibberellin receptor GID1, putative [Ricinus communis]
11 Hb_002481_070 0.1528836746 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
12 Hb_000035_300 0.1612664633 - - conserved hypothetical protein [Ricinus communis]
13 Hb_015912_010 0.1659235903 - - cytochrome P450, putative [Ricinus communis]
14 Hb_009297_010 0.1661200429 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
15 Hb_003636_010 0.1667069472 - - hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]
16 Hb_012702_020 0.1685791643 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
17 Hb_002294_010 0.1691639986 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
18 Hb_003752_130 0.1709191171 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
19 Hb_000101_060 0.171878022 - - -
20 Hb_000890_190 0.1807640339 - - glutaredoxin, grx, putative [Ricinus communis]

Gene co-expression network

sample Hb_124207_010 Hb_124207_010 Hb_000291_020 Hb_000291_020 Hb_124207_010--Hb_000291_020 Hb_012553_010 Hb_012553_010 Hb_124207_010--Hb_012553_010 Hb_002787_100 Hb_002787_100 Hb_124207_010--Hb_002787_100 Hb_166257_010 Hb_166257_010 Hb_124207_010--Hb_166257_010 Hb_000523_060 Hb_000523_060 Hb_124207_010--Hb_000523_060 Hb_001268_070 Hb_001268_070 Hb_124207_010--Hb_001268_070 Hb_000291_020--Hb_002787_100 Hb_000291_020--Hb_000523_060 Hb_000291_020--Hb_012553_010 Hb_000291_020--Hb_166257_010 Hb_002481_070 Hb_002481_070 Hb_000291_020--Hb_002481_070 Hb_012553_010--Hb_001268_070 Hb_012553_010--Hb_166257_010 Hb_000070_140 Hb_000070_140 Hb_012553_010--Hb_000070_140 Hb_012553_010--Hb_002787_100 Hb_002787_100--Hb_000523_060 Hb_002787_100--Hb_002481_070 Hb_000878_150 Hb_000878_150 Hb_002787_100--Hb_000878_150 Hb_009297_010 Hb_009297_010 Hb_166257_010--Hb_009297_010 Hb_000101_060 Hb_000101_060 Hb_166257_010--Hb_000101_060 Hb_166257_010--Hb_001268_070 Hb_000523_060--Hb_002481_070 Hb_000523_060--Hb_000878_150 Hb_005545_090 Hb_005545_090 Hb_000523_060--Hb_005545_090 Hb_002648_020 Hb_002648_020 Hb_001268_070--Hb_002648_020 Hb_001268_070--Hb_000070_140 Hb_001268_070--Hb_009297_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.828373 0.135566 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.281149 0

CAGE analysis