Hb_124302_030

Information

Type -
Description -
Location Contig124302: 23782-24859
Sequence    

Annotation

kegg
ID bvg:104896903
description serine carboxypeptidase-like
nr
ID XP_010681991.1
description PREDICTED: serine carboxypeptidase-like [Beta vulgaris subsp. vulgaris]
swissprot
ID Q56WF8
description Serine carboxypeptidase-like 48 OS=Arabidopsis thaliana GN=SCPL48 PE=2 SV=2
trembl
ID B9HLG7
description Carboxypeptidase OS=Populus trichocarpa GN=POPTR_0008s03480g PE=3 SV=2
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124302_030 0.0 - - PREDICTED: serine carboxypeptidase-like [Beta vulgaris subsp. vulgaris]
2 Hb_002701_140 0.1660753665 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
3 Hb_003175_020 0.1806650668 - - homeobox protein knotted-1, putative [Ricinus communis]
4 Hb_000940_020 0.1857662395 - - hypothetical protein POPTR_0004s17500g [Populus trichocarpa]
5 Hb_128912_010 0.1862991195 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
6 Hb_006351_080 0.1899516251 - - hypothetical protein B456_011G275400 [Gossypium raimondii]
7 Hb_004586_380 0.1910989788 - - purine transporter, putative [Ricinus communis]
8 Hb_000532_060 0.1989836832 - - copper-transporting atpase p-type, putative [Ricinus communis]
9 Hb_017524_010 0.1998303127 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
10 Hb_000128_010 0.2014631024 - - dimethylaniline monooxygenase, putative [Ricinus communis]
11 Hb_000844_010 0.2040046257 - - PREDICTED: lysine histidine transporter-like 8 [Jatropha curcas]
12 Hb_017417_030 0.2092360037 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
13 Hb_000825_040 0.2093685877 - - catalytic, putative [Ricinus communis]
14 Hb_000170_230 0.2108328753 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
15 Hb_005424_070 0.211067161 - - PREDICTED: TATA-box-binding protein 1-like [Jatropha curcas]
16 Hb_000009_260 0.2125619454 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
17 Hb_116635_010 0.2138157819 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
18 Hb_176149_010 0.2141083155 - - hypothetical protein JCGZ_16793 [Jatropha curcas]
19 Hb_046117_050 0.2157234392 transcription factor TF Family: C2H2 hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
20 Hb_004161_010 0.2164765584 - - hypothetical protein JCGZ_21278 [Jatropha curcas]

Gene co-expression network

sample Hb_124302_030 Hb_124302_030 Hb_002701_140 Hb_002701_140 Hb_124302_030--Hb_002701_140 Hb_003175_020 Hb_003175_020 Hb_124302_030--Hb_003175_020 Hb_000940_020 Hb_000940_020 Hb_124302_030--Hb_000940_020 Hb_128912_010 Hb_128912_010 Hb_124302_030--Hb_128912_010 Hb_006351_080 Hb_006351_080 Hb_124302_030--Hb_006351_080 Hb_004586_380 Hb_004586_380 Hb_124302_030--Hb_004586_380 Hb_004161_010 Hb_004161_010 Hb_002701_140--Hb_004161_010 Hb_000277_020 Hb_000277_020 Hb_002701_140--Hb_000277_020 Hb_002701_140--Hb_000940_020 Hb_000825_040 Hb_000825_040 Hb_002701_140--Hb_000825_040 Hb_003847_140 Hb_003847_140 Hb_002701_140--Hb_003847_140 Hb_000656_360 Hb_000656_360 Hb_002701_140--Hb_000656_360 Hb_025194_010 Hb_025194_010 Hb_003175_020--Hb_025194_010 Hb_141142_010 Hb_141142_010 Hb_003175_020--Hb_141142_010 Hb_133636_010 Hb_133636_010 Hb_003175_020--Hb_133636_010 Hb_007144_010 Hb_007144_010 Hb_003175_020--Hb_007144_010 Hb_101089_010 Hb_101089_010 Hb_003175_020--Hb_101089_010 Hb_000345_190 Hb_000345_190 Hb_000940_020--Hb_000345_190 Hb_001810_010 Hb_001810_010 Hb_000940_020--Hb_001810_010 Hb_000940_020--Hb_004586_380 Hb_029866_140 Hb_029866_140 Hb_000940_020--Hb_029866_140 Hb_000940_020--Hb_006351_080 Hb_150643_010 Hb_150643_010 Hb_128912_010--Hb_150643_010 Hb_047690_010 Hb_047690_010 Hb_128912_010--Hb_047690_010 Hb_135811_020 Hb_135811_020 Hb_128912_010--Hb_135811_020 Hb_001487_020 Hb_001487_020 Hb_128912_010--Hb_001487_020 Hb_000532_060 Hb_000532_060 Hb_128912_010--Hb_000532_060 Hb_007785_020 Hb_007785_020 Hb_128912_010--Hb_007785_020 Hb_006351_080--Hb_004586_380 Hb_176149_010 Hb_176149_010 Hb_006351_080--Hb_176149_010 Hb_000128_010 Hb_000128_010 Hb_006351_080--Hb_000128_010 Hb_001331_050 Hb_001331_050 Hb_006351_080--Hb_001331_050 Hb_119441_010 Hb_119441_010 Hb_006351_080--Hb_119441_010 Hb_045810_010 Hb_045810_010 Hb_006351_080--Hb_045810_010 Hb_004586_380--Hb_176149_010 Hb_004586_380--Hb_000128_010 Hb_004098_010 Hb_004098_010 Hb_004586_380--Hb_004098_010 Hb_004586_380--Hb_000656_360 Hb_004586_380--Hb_119441_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.77092 0 0.267299 0.125527 0.0601515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.465504 0

CAGE analysis