Hb_124315_020

Information

Type -
Description -
Location Contig124315: 8418-9925
Sequence    

Annotation

kegg
ID rcu:RCOM_1122310
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002525463.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q680Z7
description Pentatricopeptide repeat-containing protein At1g09220, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E25 PE=2 SV=1
trembl
ID B9SHJ4
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1122310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124315_020 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_001247_070 0.0676894531 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
3 Hb_000139_090 0.0756115358 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
4 Hb_003216_080 0.0767769422 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
5 Hb_001930_010 0.0778450014 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
6 Hb_001245_070 0.0808043421 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
7 Hb_000031_050 0.0816139959 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
8 Hb_000390_070 0.0833897521 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
9 Hb_003938_080 0.08340603 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
10 Hb_007757_110 0.0835328233 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
11 Hb_006649_060 0.0836851428 - - conserved hypothetical protein [Ricinus communis]
12 Hb_008500_010 0.0889689655 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
13 Hb_000174_220 0.0893883321 - - cohesin subunit rad21, putative [Ricinus communis]
14 Hb_000313_060 0.0897565358 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
15 Hb_001584_150 0.0908158186 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
16 Hb_012656_030 0.0914269755 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
17 Hb_006316_040 0.0928831411 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
18 Hb_004724_060 0.09312486 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
19 Hb_002524_040 0.0932332122 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
20 Hb_007586_030 0.095460457 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_124315_020 Hb_124315_020 Hb_001247_070 Hb_001247_070 Hb_124315_020--Hb_001247_070 Hb_000139_090 Hb_000139_090 Hb_124315_020--Hb_000139_090 Hb_003216_080 Hb_003216_080 Hb_124315_020--Hb_003216_080 Hb_001930_010 Hb_001930_010 Hb_124315_020--Hb_001930_010 Hb_001245_070 Hb_001245_070 Hb_124315_020--Hb_001245_070 Hb_000031_050 Hb_000031_050 Hb_124315_020--Hb_000031_050 Hb_001247_070--Hb_000139_090 Hb_001268_350 Hb_001268_350 Hb_001247_070--Hb_001268_350 Hb_001247_070--Hb_001930_010 Hb_002188_110 Hb_002188_110 Hb_001247_070--Hb_002188_110 Hb_000174_220 Hb_000174_220 Hb_001247_070--Hb_000174_220 Hb_000139_090--Hb_000174_220 Hb_002524_040 Hb_002524_040 Hb_000139_090--Hb_002524_040 Hb_007576_120 Hb_007576_120 Hb_000139_090--Hb_007576_120 Hb_000002_040 Hb_000002_040 Hb_000139_090--Hb_000002_040 Hb_015807_070 Hb_015807_070 Hb_000139_090--Hb_015807_070 Hb_003938_080 Hb_003938_080 Hb_003216_080--Hb_003938_080 Hb_009411_010 Hb_009411_010 Hb_003216_080--Hb_009411_010 Hb_001322_210 Hb_001322_210 Hb_003216_080--Hb_001322_210 Hb_003544_100 Hb_003544_100 Hb_003216_080--Hb_003544_100 Hb_000107_500 Hb_000107_500 Hb_003216_080--Hb_000107_500 Hb_003216_080--Hb_001930_010 Hb_000390_070 Hb_000390_070 Hb_001930_010--Hb_000390_070 Hb_000313_060 Hb_000313_060 Hb_001930_010--Hb_000313_060 Hb_000514_060 Hb_000514_060 Hb_001930_010--Hb_000514_060 Hb_000661_050 Hb_000661_050 Hb_001245_070--Hb_000661_050 Hb_175338_030 Hb_175338_030 Hb_001245_070--Hb_175338_030 Hb_000453_170 Hb_000453_170 Hb_001245_070--Hb_000453_170 Hb_000392_300 Hb_000392_300 Hb_001245_070--Hb_000392_300 Hb_000244_250 Hb_000244_250 Hb_001245_070--Hb_000244_250 Hb_006573_200 Hb_006573_200 Hb_000031_050--Hb_006573_200 Hb_006649_060 Hb_006649_060 Hb_000031_050--Hb_006649_060 Hb_000077_230 Hb_000077_230 Hb_000031_050--Hb_000077_230 Hb_004204_080 Hb_004204_080 Hb_000031_050--Hb_004204_080 Hb_007757_110 Hb_007757_110 Hb_000031_050--Hb_007757_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.81138 2.44484 0.641978 0.468154 2.33294 2.78295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18213 1.28743 2.44885 1.17693 1.47193

CAGE analysis