Hb_124315_040

Information

Type -
Description -
Location Contig124315: 29889-34203
Sequence    

Annotation

kegg
ID rcu:RCOM_1122440
description hypothetical protein
nr
ID ADR71295.1
description hypothetical protein 19 [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID I3NMQ8
description Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07399: 30156-34122
cDNA
(Sanger)
(ID:Location)		 002_J01.ab1: 30272-34078 , 004_D06.ab1: 30171-33810 , 004_H24.ab1: 30266-34078 , 006_L21.ab1: 30282-34081 , 006_M04.ab1: 30269-34080 , 010_K09.ab1: 30354-34078 , 013_L15.ab1: 30342-34079 , 016_D19.ab1: 30291-34078 , 017_B01.ab1: 30279-34078 , 017_C24.ab1: 30288-34080 , 021_C19.ab1: 30368-34078 , 023_E06.ab1: 30377-34078 , 024_J03.ab1: 30735-34066 , 031_K18.ab1: 30282-34080 , 033_B05.ab1: 30287-34071 , 033_N16.ab1: 30323-34078 , 033_N21.ab1: 30340-34080 , 033_P01.ab1: 30272-34078 , 035_E08.ab1: 30270-34120 , 039_F08.ab1: 30269-34080 , 042_G01.ab1: 30272-34080 , 046_J03.ab1: 30286-34078 , 047_M06.ab1: 30287-34080 , 048_K24.ab1: 30175-33810 , 048_L12.ab1: 30281-34080 , 050_D12.ab1: 30305-34080 , 050_K16.ab1: 30367-34078 , 050_N13.ab1: 30912-34078 , 052_I10.ab1: 30378-34080 , 053_F14.ab1: 30307-34078

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124315_040 0.0 - - hypothetical protein 19 [Hevea brasiliensis]
2 Hb_012347_010 0.0969397406 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
3 Hb_000957_040 0.1016862501 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
4 Hb_003540_230 0.1093448224 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
5 Hb_010872_060 0.10939092 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
6 Hb_005396_040 0.1106659997 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_029584_140 0.1124895158 - - senescence-associated family protein [Populus trichocarpa]
8 Hb_023214_010 0.1177422098 - - aberrant lateral root formation 1 family protein [Populus trichocarpa]
9 Hb_000130_390 0.1226133967 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
10 Hb_012799_060 0.1248559849 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
11 Hb_000762_020 0.1269468261 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
12 Hb_001631_070 0.1283536607 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
13 Hb_001109_120 0.1298646785 - - PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
14 Hb_000580_170 0.1311822712 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
15 Hb_002027_300 0.1353439976 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
16 Hb_001140_160 0.1382684311 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
17 Hb_001631_080 0.1427505827 - - PREDICTED: importin-5-like [Populus euphratica]
18 Hb_006120_200 0.143908434 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
19 Hb_003018_180 0.1465858624 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
20 Hb_048141_010 0.1523726541 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 2 [Jatropha curcas]

Gene co-expression network

sample Hb_124315_040 Hb_124315_040 Hb_012347_010 Hb_012347_010 Hb_124315_040--Hb_012347_010 Hb_000957_040 Hb_000957_040 Hb_124315_040--Hb_000957_040 Hb_003540_230 Hb_003540_230 Hb_124315_040--Hb_003540_230 Hb_010872_060 Hb_010872_060 Hb_124315_040--Hb_010872_060 Hb_005396_040 Hb_005396_040 Hb_124315_040--Hb_005396_040 Hb_029584_140 Hb_029584_140 Hb_124315_040--Hb_029584_140 Hb_002027_300 Hb_002027_300 Hb_012347_010--Hb_002027_300 Hb_012347_010--Hb_000957_040 Hb_012347_010--Hb_010872_060 Hb_001140_160 Hb_001140_160 Hb_012347_010--Hb_001140_160 Hb_000130_390 Hb_000130_390 Hb_012347_010--Hb_000130_390 Hb_000762_020 Hb_000762_020 Hb_000957_040--Hb_000762_020 Hb_000957_040--Hb_001140_160 Hb_000957_040--Hb_000130_390 Hb_000957_040--Hb_010872_060 Hb_000957_040--Hb_002027_300 Hb_002235_230 Hb_002235_230 Hb_003540_230--Hb_002235_230 Hb_003540_230--Hb_029584_140 Hb_000580_170 Hb_000580_170 Hb_003540_230--Hb_000580_170 Hb_005016_130 Hb_005016_130 Hb_003540_230--Hb_005016_130 Hb_012799_060 Hb_012799_060 Hb_003540_230--Hb_012799_060 Hb_003038_180 Hb_003038_180 Hb_003540_230--Hb_003038_180 Hb_010872_060--Hb_001140_160 Hb_001631_070 Hb_001631_070 Hb_010872_060--Hb_001631_070 Hb_010872_060--Hb_012799_060 Hb_023214_010 Hb_023214_010 Hb_005396_040--Hb_023214_010 Hb_003207_110 Hb_003207_110 Hb_005396_040--Hb_003207_110 Hb_002471_070 Hb_002471_070 Hb_005396_040--Hb_002471_070 Hb_002876_030 Hb_002876_030 Hb_005396_040--Hb_002876_030 Hb_005396_040--Hb_012347_010 Hb_029584_140--Hb_003038_180 Hb_029584_140--Hb_012799_060 Hb_029584_140--Hb_000580_170 Hb_007120_070 Hb_007120_070 Hb_029584_140--Hb_007120_070 Hb_030765_020 Hb_030765_020 Hb_029584_140--Hb_030765_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1840.54 57.887 27.1148 263.2 520.777 615.674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2134 858.017 845.068 54.9853 22.6887

CAGE analysis