Hb_124379_010

Information

Type -
Description -
Location Contig124379: 1596-2680
Sequence    

Annotation

kegg
ID cit:102619181
description notchless protein homolog
nr
ID XP_006492689.1
description PREDICTED: notchless protein homolog [Citrus sinensis]
swissprot
ID Q9FLX9
description Notchless protein homolog OS=Arabidopsis thaliana GN=NLE1 PE=2 SV=1
trembl
ID A0A067F6F8
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010816mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07402: 1535-2661 , PASA_asmbl_07403: 2431-2555
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124379_010 0.0 - - PREDICTED: notchless protein homolog [Citrus sinensis]
2 Hb_006916_050 0.1051108425 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
3 Hb_068079_010 0.1125115656 - - -
4 Hb_000029_400 0.1184427592 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
5 Hb_000302_190 0.1214985075 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
6 Hb_070624_010 0.1249502761 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
7 Hb_000608_390 0.125906997 - - hypothetical protein B456_010G140700 [Gossypium raimondii]
8 Hb_003071_030 0.1270899408 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
9 Hb_003355_010 0.1273967518 - - Heat shock 70 kDa protein, putative [Ricinus communis]
10 Hb_000454_100 0.1283034547 - - aldo-keto reductase, putative [Ricinus communis]
11 Hb_000358_210 0.1295748505 - - oligosaccharyl transferase, putative [Ricinus communis]
12 Hb_002249_080 0.1316636567 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
13 Hb_003058_100 0.1326039819 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
14 Hb_000243_120 0.1329926041 - - PREDICTED: MORC family CW-type zinc finger protein 3-like isoform X2 [Jatropha curcas]
15 Hb_163950_070 0.1331468899 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
16 Hb_002828_060 0.1346496339 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
17 Hb_001832_200 0.1356747626 - - PREDICTED: PCI domain-containing protein 2 isoform X1 [Jatropha curcas]
18 Hb_004705_160 0.1364284421 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
19 Hb_000645_180 0.137009672 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
20 Hb_138585_030 0.1379827034 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]

Gene co-expression network

sample Hb_124379_010 Hb_124379_010 Hb_006916_050 Hb_006916_050 Hb_124379_010--Hb_006916_050 Hb_068079_010 Hb_068079_010 Hb_124379_010--Hb_068079_010 Hb_000029_400 Hb_000029_400 Hb_124379_010--Hb_000029_400 Hb_000302_190 Hb_000302_190 Hb_124379_010--Hb_000302_190 Hb_070624_010 Hb_070624_010 Hb_124379_010--Hb_070624_010 Hb_000608_390 Hb_000608_390 Hb_124379_010--Hb_000608_390 Hb_002249_080 Hb_002249_080 Hb_006916_050--Hb_002249_080 Hb_006916_050--Hb_068079_010 Hb_000376_210 Hb_000376_210 Hb_006916_050--Hb_000376_210 Hb_000617_250 Hb_000617_250 Hb_006916_050--Hb_000617_250 Hb_002828_060 Hb_002828_060 Hb_006916_050--Hb_002828_060 Hb_004705_160 Hb_004705_160 Hb_006916_050--Hb_004705_160 Hb_068079_010--Hb_002828_060 Hb_000108_020 Hb_000108_020 Hb_068079_010--Hb_000108_020 Hb_000862_100 Hb_000862_100 Hb_068079_010--Hb_000862_100 Hb_022693_130 Hb_022693_130 Hb_068079_010--Hb_022693_130 Hb_000645_180 Hb_000645_180 Hb_068079_010--Hb_000645_180 Hb_068079_010--Hb_004705_160 Hb_001504_010 Hb_001504_010 Hb_000029_400--Hb_001504_010 Hb_007483_070 Hb_007483_070 Hb_000029_400--Hb_007483_070 Hb_001882_010 Hb_001882_010 Hb_000029_400--Hb_001882_010 Hb_001053_190 Hb_001053_190 Hb_000029_400--Hb_001053_190 Hb_000163_260 Hb_000163_260 Hb_000029_400--Hb_000163_260 Hb_000926_060 Hb_000926_060 Hb_000029_400--Hb_000926_060 Hb_001789_160 Hb_001789_160 Hb_000302_190--Hb_001789_160 Hb_003071_030 Hb_003071_030 Hb_000302_190--Hb_003071_030 Hb_001279_090 Hb_001279_090 Hb_000302_190--Hb_001279_090 Hb_000224_220 Hb_000224_220 Hb_000302_190--Hb_000224_220 Hb_007594_080 Hb_007594_080 Hb_000302_190--Hb_007594_080 Hb_000808_210 Hb_000808_210 Hb_000302_190--Hb_000808_210 Hb_070624_010--Hb_000926_060 Hb_000358_210 Hb_000358_210 Hb_070624_010--Hb_000358_210 Hb_003680_220 Hb_003680_220 Hb_070624_010--Hb_003680_220 Hb_070624_010--Hb_000645_180 Hb_000265_070 Hb_000265_070 Hb_070624_010--Hb_000265_070 Hb_029695_070 Hb_029695_070 Hb_070624_010--Hb_029695_070 Hb_163950_070 Hb_163950_070 Hb_000608_390--Hb_163950_070 Hb_000094_100 Hb_000094_100 Hb_000608_390--Hb_000094_100 Hb_005665_090 Hb_005665_090 Hb_000608_390--Hb_005665_090 Hb_002986_090 Hb_002986_090 Hb_000608_390--Hb_002986_090 Hb_002044_020 Hb_002044_020 Hb_000608_390--Hb_002044_020 Hb_002915_010 Hb_002915_010 Hb_000608_390--Hb_002915_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4138 1.41387 5.64325 3.83144 2.54946 0.505207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35647 1.47297 0.737207 2.77232 6.23963

CAGE analysis