Hb_124540_020

Information

Type -
Description -
Location Contig124540: 15124-19289
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID AHC13200.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID V9QEM3
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0003676
description polyprotein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124540_020 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_090778_010 0.0011801104 - - PREDICTED: uncharacterized protein LOC105764482 [Gossypium raimondii]
3 Hb_011616_060 0.0014104648 - - PREDICTED: uncharacterized protein LOC105789623 [Gossypium raimondii]
4 Hb_001662_020 0.0015102955 - - PREDICTED: F-box protein SKIP23-like isoform X3 [Eucalyptus grandis]
5 Hb_026532_010 0.0036573265 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
6 Hb_010783_010 0.0053117324 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_001817_190 0.0054233376 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_001972_020 0.0055948388 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_004019_100 0.006363303 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
10 Hb_001309_030 0.0065050151 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_000710_120 0.0067698376 - - hypothetical protein JCGZ_01844 [Jatropha curcas]
12 Hb_008976_010 0.0071741696 - - -
13 Hb_009188_010 0.0086365662 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
14 Hb_011537_090 0.0122389731 - - hypothetical protein B456_009G071100 [Gossypium raimondii]
15 Hb_097889_010 0.0141352115 - - PREDICTED: uncharacterized protein LOC102584707 [Solanum tuberosum]
16 Hb_186440_010 0.0929596347 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_027890_010 0.1311420797 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
18 Hb_031691_010 0.135224135 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_012330_030 0.1364829408 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012404_010 0.1532472467 - - -

Gene co-expression network

sample Hb_124540_020 Hb_124540_020 Hb_090778_010 Hb_090778_010 Hb_124540_020--Hb_090778_010 Hb_011616_060 Hb_011616_060 Hb_124540_020--Hb_011616_060 Hb_001662_020 Hb_001662_020 Hb_124540_020--Hb_001662_020 Hb_026532_010 Hb_026532_010 Hb_124540_020--Hb_026532_010 Hb_010783_010 Hb_010783_010 Hb_124540_020--Hb_010783_010 Hb_001817_190 Hb_001817_190 Hb_124540_020--Hb_001817_190 Hb_090778_010--Hb_011616_060 Hb_090778_010--Hb_001662_020 Hb_090778_010--Hb_026532_010 Hb_090778_010--Hb_010783_010 Hb_090778_010--Hb_001817_190 Hb_011616_060--Hb_001662_020 Hb_011616_060--Hb_026532_010 Hb_011616_060--Hb_010783_010 Hb_011616_060--Hb_001817_190 Hb_001662_020--Hb_026532_010 Hb_001662_020--Hb_010783_010 Hb_001662_020--Hb_001817_190 Hb_026532_010--Hb_010783_010 Hb_026532_010--Hb_001817_190 Hb_010783_010--Hb_001817_190 Hb_001972_020 Hb_001972_020 Hb_010783_010--Hb_001972_020 Hb_004019_100 Hb_004019_100 Hb_010783_010--Hb_004019_100 Hb_001309_030 Hb_001309_030 Hb_010783_010--Hb_001309_030 Hb_000710_120 Hb_000710_120 Hb_010783_010--Hb_000710_120 Hb_008976_010 Hb_008976_010 Hb_010783_010--Hb_008976_010 Hb_001817_190--Hb_001972_020 Hb_001817_190--Hb_004019_100 Hb_001817_190--Hb_001309_030 Hb_001817_190--Hb_000710_120 Hb_001817_190--Hb_008976_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0102904 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0405568

CAGE analysis