Hb_124579_020

Information

Type -
Description -
Location Contig124579: 2581-5783
Sequence    

Annotation

kegg
ID cit:102622319
description putative cysteine-rich receptor-like protein kinase 35-like
nr
ID XP_012091422.1
description PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
swissprot
ID Q9LDT0
description Putative cysteine-rich receptor-like protein kinase 30 OS=Arabidopsis thaliana GN=CRK30 PE=3 SV=1
trembl
ID A0A067JAH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21287 PE=3 SV=1
Gene Ontology
ID GO:0004672
description cysteine-rich rlk

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07425: 3256-3469
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124579_020 0.0 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
2 Hb_010311_020 0.0630983299 - - lrr receptor protein kinase, putative [Ricinus communis]
3 Hb_000130_480 0.0846870324 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
4 Hb_000416_010 0.085429403 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
5 Hb_185474_020 0.0859071097 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
6 Hb_003142_080 0.0859243753 - - receptor serine/threonine kinase, putative [Ricinus communis]
7 Hb_002635_010 0.0865748562 - - homogentisate phytyl transferase [Hevea brasiliensis]
8 Hb_006198_040 0.0903034144 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000380_140 0.0952004868 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
10 Hb_167211_010 0.0988543058 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
11 Hb_001109_170 0.1073547168 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
12 Hb_000776_020 0.1157961992 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
13 Hb_000033_010 0.1165336924 - - Protein MLO, putative [Ricinus communis]
14 Hb_002122_070 0.1173302944 - - unnamed protein product [Vitis vinifera]
15 Hb_007850_110 0.1192773836 - - MADS-box transcription factor 3 [Hevea brasiliensis]
16 Hb_006970_120 0.1216589137 - - conserved hypothetical protein [Ricinus communis]
17 Hb_082550_010 0.1222186634 - - hypothetical protein CISIN_1g0081081mg, partial [Citrus sinensis]
18 Hb_000164_110 0.1242732308 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
19 Hb_004724_260 0.1247563785 - - PREDICTED: 40S ribosomal protein S14-2-like [Gossypium raimondii]
20 Hb_001652_130 0.1283693009 - - hypothetical protein B456_002G193900 [Gossypium raimondii]

Gene co-expression network

sample Hb_124579_020 Hb_124579_020 Hb_010311_020 Hb_010311_020 Hb_124579_020--Hb_010311_020 Hb_000130_480 Hb_000130_480 Hb_124579_020--Hb_000130_480 Hb_000416_010 Hb_000416_010 Hb_124579_020--Hb_000416_010 Hb_185474_020 Hb_185474_020 Hb_124579_020--Hb_185474_020 Hb_003142_080 Hb_003142_080 Hb_124579_020--Hb_003142_080 Hb_002635_010 Hb_002635_010 Hb_124579_020--Hb_002635_010 Hb_010311_020--Hb_000416_010 Hb_010311_020--Hb_185474_020 Hb_000380_140 Hb_000380_140 Hb_010311_020--Hb_000380_140 Hb_010311_020--Hb_002635_010 Hb_006198_040 Hb_006198_040 Hb_010311_020--Hb_006198_040 Hb_000130_480--Hb_002635_010 Hb_000130_480--Hb_006198_040 Hb_004607_160 Hb_004607_160 Hb_000130_480--Hb_004607_160 Hb_000130_480--Hb_003142_080 Hb_000836_030 Hb_000836_030 Hb_000130_480--Hb_000836_030 Hb_000416_010--Hb_185474_020 Hb_001301_010 Hb_001301_010 Hb_000416_010--Hb_001301_010 Hb_001109_170 Hb_001109_170 Hb_000416_010--Hb_001109_170 Hb_000776_020 Hb_000776_020 Hb_000416_010--Hb_000776_020 Hb_185474_020--Hb_003142_080 Hb_185474_020--Hb_006198_040 Hb_185474_020--Hb_000380_140 Hb_001652_130 Hb_001652_130 Hb_185474_020--Hb_001652_130 Hb_003142_080--Hb_006198_040 Hb_000033_010 Hb_000033_010 Hb_003142_080--Hb_000033_010 Hb_003142_080--Hb_002635_010 Hb_029223_010 Hb_029223_010 Hb_003142_080--Hb_029223_010 Hb_002635_010--Hb_000380_140 Hb_002635_010--Hb_004607_160 Hb_007850_110 Hb_007850_110 Hb_002635_010--Hb_007850_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0121792 1.89667 5.03304 5.53548 0.0114042 0.0360005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.110875 0.087233 0 6.43306 15.0261

CAGE analysis