Hb_124587_010

Information

Type -
Description -
Location Contig124587: 999-1461
Sequence    

Annotation

kegg
ID mus:103981893
description importin-5-like
nr
ID XP_009396926.1
description PREDICTED: importin-5-like [Musa acuminata subsp. malaccensis]
swissprot
ID Q8BKC5
description Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3
trembl
ID M0SPP9
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0016020
description importin-5 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124587_010 0.0 - - PREDICTED: importin-5-like [Musa acuminata subsp. malaccensis]
2 Hb_103351_010 0.1036994221 - - hypothetical protein POPTR_0002s01570g [Populus trichocarpa]
3 Hb_000117_020 0.152929119 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
4 Hb_074961_010 0.1678314233 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
5 Hb_000117_010 0.169489141 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Malus domestica]
6 Hb_002253_110 0.1723182893 - - cysteine desulfurylase, putative [Ricinus communis]
7 Hb_121236_010 0.1724478987 - - geranyl-diphosphate synthase [Hevea brasiliensis]
8 Hb_001722_020 0.183358645 - - -
9 Hb_088774_010 0.1890450453 - - -
10 Hb_000707_070 0.1905973616 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like isoform X1 [Populus euphratica]
11 Hb_115919_010 0.1918916394 - - unknown [Lotus japonicus]
12 Hb_027445_060 0.1938750207 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
13 Hb_073339_010 0.1949734639 - - hypothetical protein 30 [Hevea brasiliensis]
14 Hb_000295_090 0.2071994485 - - Clathrin light chain 2 [Glycine soja]
15 Hb_144898_010 0.2085232532 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
16 Hb_003507_040 0.2100983986 - - hypothetical protein RCOM_1685970 [Ricinus communis]
17 Hb_008277_030 0.2134584533 - - hypothetical protein CICLE_v10024419mg, partial [Citrus clementina]
18 Hb_001095_060 0.2162292394 - - Uncharacterized protein TCM_012505 [Theobroma cacao]
19 Hb_001513_020 0.2169106721 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
20 Hb_061581_010 0.2176979464 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_124587_010 Hb_124587_010 Hb_103351_010 Hb_103351_010 Hb_124587_010--Hb_103351_010 Hb_000117_020 Hb_000117_020 Hb_124587_010--Hb_000117_020 Hb_074961_010 Hb_074961_010 Hb_124587_010--Hb_074961_010 Hb_000117_010 Hb_000117_010 Hb_124587_010--Hb_000117_010 Hb_002253_110 Hb_002253_110 Hb_124587_010--Hb_002253_110 Hb_121236_010 Hb_121236_010 Hb_124587_010--Hb_121236_010 Hb_103351_010--Hb_000117_020 Hb_103351_010--Hb_002253_110 Hb_103351_010--Hb_074961_010 Hb_103351_010--Hb_000117_010 Hb_000707_070 Hb_000707_070 Hb_103351_010--Hb_000707_070 Hb_000117_020--Hb_074961_010 Hb_000117_020--Hb_000117_010 Hb_000117_020--Hb_002253_110 Hb_000117_020--Hb_000707_070 Hb_074961_010--Hb_000117_010 Hb_074961_010--Hb_002253_110 Hb_000033_060 Hb_000033_060 Hb_074961_010--Hb_000033_060 Hb_000878_040 Hb_000878_040 Hb_074961_010--Hb_000878_040 Hb_023327_030 Hb_023327_030 Hb_074961_010--Hb_023327_030 Hb_005271_150 Hb_005271_150 Hb_000117_010--Hb_005271_150 Hb_073339_010 Hb_073339_010 Hb_000117_010--Hb_073339_010 Hb_000117_010--Hb_023327_030 Hb_003360_020 Hb_003360_020 Hb_002253_110--Hb_003360_020 Hb_002769_040 Hb_002769_040 Hb_002253_110--Hb_002769_040 Hb_000856_100 Hb_000856_100 Hb_002253_110--Hb_000856_100 Hb_002253_110--Hb_000033_060 Hb_009193_130 Hb_009193_130 Hb_002253_110--Hb_009193_130 Hb_115919_010 Hb_115919_010 Hb_121236_010--Hb_115919_010 Hb_027445_060 Hb_027445_060 Hb_121236_010--Hb_027445_060 Hb_061581_010 Hb_061581_010 Hb_121236_010--Hb_061581_010 Hb_001095_060 Hb_001095_060 Hb_121236_010--Hb_001095_060 Hb_005305_060 Hb_005305_060 Hb_121236_010--Hb_005305_060 Hb_135403_010 Hb_135403_010 Hb_121236_010--Hb_135403_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6244 0.316291 0 4.77159 11.526 57.2347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5514 4.19006 4.61208 0.738048 0

CAGE analysis