Hb_124677_010

Information

Type -
Description -
Location Contig124677: 11788-14359
Sequence    

Annotation

kegg
ID rcu:RCOM_1577090
description hypothetical protein
nr
ID XP_002513453.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RI84
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1577090 PE=4 SV=1
Gene Ontology
ID GO:0006457
description dna double-strand break repair rad50 atpase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07447: 11547-14000 , PASA_asmbl_07448: 14020-14239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124677_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_101133_030 0.0827005346 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
3 Hb_012807_030 0.0840347378 - - PREDICTED: uncharacterized protein LOC105628042 isoform X1 [Jatropha curcas]
4 Hb_000866_060 0.0869033137 - - putative glycerol-3-phosphate acyltransferase [Vernicia fordii]
5 Hb_015044_010 0.0886854052 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
6 Hb_000749_140 0.0895626422 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
7 Hb_000128_040 0.0896739029 - - PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]
8 Hb_000809_190 0.0947635606 - - PREDICTED: myosin-6-like [Jatropha curcas]
9 Hb_001014_240 0.0999900959 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
10 Hb_004920_020 0.1071594425 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
11 Hb_006267_040 0.1076895754 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]
12 Hb_000340_280 0.1083723493 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000359_050 0.1100296414 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
14 Hb_001102_130 0.1135760477 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
15 Hb_005575_010 0.1150036582 - - hypothetical protein POPTR_0004s02560g [Populus trichocarpa]
16 Hb_001751_050 0.1156968094 - - PREDICTED: phytol kinase 1, chloroplastic [Jatropha curcas]
17 Hb_003937_010 0.1161476136 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
18 Hb_000002_140 0.1167142591 - - hypothetical protein JCGZ_02318 [Jatropha curcas]
19 Hb_002093_020 0.1184254118 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
20 Hb_080922_010 0.1187401711 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_124677_010 Hb_124677_010 Hb_101133_030 Hb_101133_030 Hb_124677_010--Hb_101133_030 Hb_012807_030 Hb_012807_030 Hb_124677_010--Hb_012807_030 Hb_000866_060 Hb_000866_060 Hb_124677_010--Hb_000866_060 Hb_015044_010 Hb_015044_010 Hb_124677_010--Hb_015044_010 Hb_000749_140 Hb_000749_140 Hb_124677_010--Hb_000749_140 Hb_000128_040 Hb_000128_040 Hb_124677_010--Hb_000128_040 Hb_000340_280 Hb_000340_280 Hb_101133_030--Hb_000340_280 Hb_101133_030--Hb_000749_140 Hb_001014_240 Hb_001014_240 Hb_101133_030--Hb_001014_240 Hb_000359_050 Hb_000359_050 Hb_101133_030--Hb_000359_050 Hb_001233_050 Hb_001233_050 Hb_101133_030--Hb_001233_050 Hb_003651_030 Hb_003651_030 Hb_101133_030--Hb_003651_030 Hb_002762_050 Hb_002762_050 Hb_012807_030--Hb_002762_050 Hb_000002_140 Hb_000002_140 Hb_012807_030--Hb_000002_140 Hb_000008_160 Hb_000008_160 Hb_012807_030--Hb_000008_160 Hb_012807_030--Hb_000866_060 Hb_012807_030--Hb_000128_040 Hb_006267_040 Hb_006267_040 Hb_000866_060--Hb_006267_040 Hb_127263_010 Hb_127263_010 Hb_000866_060--Hb_127263_010 Hb_000239_050 Hb_000239_050 Hb_000866_060--Hb_000239_050 Hb_000866_060--Hb_015044_010 Hb_001409_080 Hb_001409_080 Hb_000866_060--Hb_001409_080 Hb_000300_110 Hb_000300_110 Hb_000866_060--Hb_000300_110 Hb_015044_010--Hb_001014_240 Hb_015044_010--Hb_006267_040 Hb_015044_010--Hb_000128_040 Hb_015044_010--Hb_101133_030 Hb_003937_010 Hb_003937_010 Hb_015044_010--Hb_003937_010 Hb_001916_110 Hb_001916_110 Hb_000749_140--Hb_001916_110 Hb_000749_140--Hb_000340_280 Hb_000749_140--Hb_001233_050 Hb_001942_060 Hb_001942_060 Hb_000749_140--Hb_001942_060 Hb_000928_100 Hb_000928_100 Hb_000749_140--Hb_000928_100 Hb_000128_040--Hb_001014_240 Hb_000128_040--Hb_101133_030 Hb_000128_040--Hb_000359_050 Hb_023344_090 Hb_023344_090 Hb_000128_040--Hb_023344_090 Hb_000128_040--Hb_006267_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.54433 29.0696 4.80596 0.0216058 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0245274 0 0 2.76604 26.5302

CAGE analysis