Hb_124677_020

Information

Type -
Description -
Location Contig124677: 18738-19148
Sequence    

Annotation

kegg
ID atr:s00030p00044250
description AMTR_s00030p00044250; hypothetical protein
nr
ID XP_006301260.1
description hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
swissprot
ID Q76MV0
description Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1
trembl
ID B8B1H8
description Histone H3 OS=Oryza sativa subsp. indica GN=OsI_21765 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07449: 18661-19648
cDNA
(Sanger)
(ID:Location)		 002_M11.ab1: 18661-19291

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124677_020 0.0 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
2 Hb_000336_060 0.084028484 - - hypothetical protein JCGZ_26632 [Jatropha curcas]
3 Hb_000260_300 0.1077255881 - - calcium binding protein/cast, putative [Ricinus communis]
4 Hb_002151_130 0.1167497546 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
5 Hb_022137_020 0.1184736167 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
6 Hb_001999_170 0.1214605345 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
7 Hb_155946_030 0.1238491757 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
8 Hb_010126_030 0.1256387972 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
9 Hb_031108_010 0.125997708 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
10 Hb_000984_290 0.1328895534 - - PREDICTED: putative lipase ROG1 isoform X2 [Jatropha curcas]
11 Hb_004586_130 0.1340258986 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000283_100 0.1389590021 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
13 Hb_007894_020 0.1390940199 - - protein translation factor SUI1 homolog 2 [Jatropha curcas]
14 Hb_101058_020 0.1390949709 - - DWNN domain isoform 2 [Theobroma cacao]
15 Hb_001579_070 0.1405140431 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
16 Hb_002007_070 0.1441785238 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
17 Hb_000045_140 0.146079805 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
18 Hb_061908_030 0.1474306535 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
19 Hb_158926_010 0.1483501442 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
20 Hb_000451_040 0.1503093388 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_124677_020 Hb_124677_020 Hb_000336_060 Hb_000336_060 Hb_124677_020--Hb_000336_060 Hb_000260_300 Hb_000260_300 Hb_124677_020--Hb_000260_300 Hb_002151_130 Hb_002151_130 Hb_124677_020--Hb_002151_130 Hb_022137_020 Hb_022137_020 Hb_124677_020--Hb_022137_020 Hb_001999_170 Hb_001999_170 Hb_124677_020--Hb_001999_170 Hb_155946_030 Hb_155946_030 Hb_124677_020--Hb_155946_030 Hb_000336_060--Hb_001999_170 Hb_010126_030 Hb_010126_030 Hb_000336_060--Hb_010126_030 Hb_000283_100 Hb_000283_100 Hb_000336_060--Hb_000283_100 Hb_000984_290 Hb_000984_290 Hb_000336_060--Hb_000984_290 Hb_000336_060--Hb_022137_020 Hb_006043_020 Hb_006043_020 Hb_000260_300--Hb_006043_020 Hb_000260_300--Hb_155946_030 Hb_005976_040 Hb_005976_040 Hb_000260_300--Hb_005976_040 Hb_018563_020 Hb_018563_020 Hb_000260_300--Hb_018563_020 Hb_000260_300--Hb_000336_060 Hb_004586_130 Hb_004586_130 Hb_002151_130--Hb_004586_130 Hb_002151_130--Hb_000984_290 Hb_061908_030 Hb_061908_030 Hb_002151_130--Hb_061908_030 Hb_002151_130--Hb_010126_030 Hb_002876_070 Hb_002876_070 Hb_002151_130--Hb_002876_070 Hb_007894_020 Hb_007894_020 Hb_022137_020--Hb_007894_020 Hb_101058_020 Hb_101058_020 Hb_022137_020--Hb_101058_020 Hb_158926_010 Hb_158926_010 Hb_022137_020--Hb_158926_010 Hb_002542_030 Hb_002542_030 Hb_022137_020--Hb_002542_030 Hb_022137_020--Hb_001999_170 Hb_001310_010 Hb_001310_010 Hb_001999_170--Hb_001310_010 Hb_010964_010 Hb_010964_010 Hb_001999_170--Hb_010964_010 Hb_001999_170--Hb_010126_030 Hb_005054_330 Hb_005054_330 Hb_001999_170--Hb_005054_330 Hb_007858_020 Hb_007858_020 Hb_001999_170--Hb_007858_020 Hb_001579_070 Hb_001579_070 Hb_155946_030--Hb_001579_070 Hb_000162_130 Hb_000162_130 Hb_155946_030--Hb_000162_130 Hb_031108_010 Hb_031108_010 Hb_155946_030--Hb_031108_010 Hb_155946_030--Hb_007894_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1286 636.573 437.14 202.764 4.99651 4.8682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.0934 38.0571 14.8736 38.1543 25.8362

CAGE analysis