Hb_124677_040

Information

Type -
Description -
Location Contig124677: 28836-32721
Sequence    

Annotation

kegg
ID rcu:RCOM_1577210
description hypothetical protein
nr
ID XP_012092772.1
description PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JL36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07909 PE=4 SV=1
Gene Ontology
ID GO:0005886
description PREDICTED: uncharacterized protein LOC105650471

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07453: 28794-32616
cDNA
(Sanger)
(ID:Location)		 046_F23.ab1: 30134-32616

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124677_040 0.0 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
2 Hb_004108_240 0.0762772879 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
3 Hb_003581_280 0.0905796931 - - KINASE 2B family protein [Populus trichocarpa]
4 Hb_002900_120 0.0976468977 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
5 Hb_004774_020 0.1002000361 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
6 Hb_003925_040 0.1040841344 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
7 Hb_000925_030 0.1071146637 - - ATP-dependent RNA helicase, putative [Ricinus communis]
8 Hb_000045_260 0.1102853994 - - protein with unknown function [Ricinus communis]
9 Hb_003147_060 0.1145461966 - - syntaxin, plant, putative [Ricinus communis]
10 Hb_000421_230 0.1168028657 - - retinal degeneration B beta, putative [Ricinus communis]
11 Hb_001376_010 0.1183703134 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
12 Hb_000699_210 0.1198949099 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
13 Hb_001500_030 0.1226767669 - - PREDICTED: uncharacterized protein At2g33490 isoform X2 [Jatropha curcas]
14 Hb_000638_280 0.1228864686 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
15 Hb_159809_050 0.1229499477 - - AT14A, putative [Ricinus communis]
16 Hb_000186_200 0.1261384205 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
17 Hb_007416_260 0.1290711145 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
18 Hb_048755_020 0.1304546564 - - hypothetical protein JCGZ_09860 [Jatropha curcas]
19 Hb_002876_210 0.1320133356 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
20 Hb_121089_020 0.1338082771 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]

Gene co-expression network

sample Hb_124677_040 Hb_124677_040 Hb_004108_240 Hb_004108_240 Hb_124677_040--Hb_004108_240 Hb_003581_280 Hb_003581_280 Hb_124677_040--Hb_003581_280 Hb_002900_120 Hb_002900_120 Hb_124677_040--Hb_002900_120 Hb_004774_020 Hb_004774_020 Hb_124677_040--Hb_004774_020 Hb_003925_040 Hb_003925_040 Hb_124677_040--Hb_003925_040 Hb_000925_030 Hb_000925_030 Hb_124677_040--Hb_000925_030 Hb_000045_260 Hb_000045_260 Hb_004108_240--Hb_000045_260 Hb_004108_240--Hb_003925_040 Hb_001376_010 Hb_001376_010 Hb_004108_240--Hb_001376_010 Hb_003147_060 Hb_003147_060 Hb_004108_240--Hb_003147_060 Hb_004108_240--Hb_004774_020 Hb_003581_280--Hb_002900_120 Hb_003581_280--Hb_000045_260 Hb_000421_230 Hb_000421_230 Hb_003581_280--Hb_000421_230 Hb_005332_140 Hb_005332_140 Hb_003581_280--Hb_005332_140 Hb_003581_280--Hb_004108_240 Hb_002965_050 Hb_002965_050 Hb_002900_120--Hb_002965_050 Hb_002876_210 Hb_002876_210 Hb_002900_120--Hb_002876_210 Hb_000156_090 Hb_000156_090 Hb_002900_120--Hb_000156_090 Hb_000711_010 Hb_000711_010 Hb_002900_120--Hb_000711_010 Hb_002900_120--Hb_004774_020 Hb_004774_020--Hb_003925_040 Hb_002042_170 Hb_002042_170 Hb_004774_020--Hb_002042_170 Hb_001439_230 Hb_001439_230 Hb_004774_020--Hb_001439_230 Hb_000699_210 Hb_000699_210 Hb_004774_020--Hb_000699_210 Hb_003925_040--Hb_003147_060 Hb_084490_010 Hb_084490_010 Hb_003925_040--Hb_084490_010 Hb_009545_090 Hb_009545_090 Hb_003925_040--Hb_009545_090 Hb_003925_040--Hb_002042_170 Hb_000925_030--Hb_003147_060 Hb_000925_030--Hb_003925_040 Hb_000925_030--Hb_004108_240 Hb_002107_060 Hb_002107_060 Hb_000925_030--Hb_002107_060 Hb_001638_030 Hb_001638_030 Hb_000925_030--Hb_001638_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.80382 35.4755 20.7452 17.1274 5.95798 4.66949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.57627 10.9439 5.42612 4.56383 10.6395

CAGE analysis