Hb_124677_050

Information

Type -
Description -
Location Contig124677: 33958-41336
Sequence    

Annotation

kegg
ID rcu:RCOM_1577220
description hypothetical protein
nr
ID XP_002513456.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RI87
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1577220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07454: 33932-41144 , PASA_asmbl_07455: 33932-41144
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124677_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003360_010 0.0907439218 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
3 Hb_007632_210 0.0960958148 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
4 Hb_005183_150 0.1013761101 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
5 Hb_002284_260 0.10202646 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
6 Hb_002311_090 0.1099444164 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
7 Hb_003228_050 0.1110732563 - - chromomethylase [Hevea brasiliensis]
8 Hb_000500_340 0.11492303 - - PREDICTED: exonuclease 1 [Jatropha curcas]
9 Hb_020301_020 0.1196495719 - - calmodulin binding protein, putative [Ricinus communis]
10 Hb_004007_130 0.1225917559 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
11 Hb_101133_050 0.1248802164 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
12 Hb_002030_130 0.1271701707 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
13 Hb_001524_120 0.1286394027 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
14 Hb_033041_010 0.1324344138 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
15 Hb_005542_150 0.1335901208 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
16 Hb_000954_040 0.1336949294 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
17 Hb_000334_120 0.1343037019 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
18 Hb_004531_080 0.1343856989 - - hypothetical protein RCOM_1491960 [Ricinus communis]
19 Hb_000260_670 0.1375571467 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
20 Hb_003106_090 0.1379353178 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]

Gene co-expression network

sample Hb_124677_050 Hb_124677_050 Hb_003360_010 Hb_003360_010 Hb_124677_050--Hb_003360_010 Hb_007632_210 Hb_007632_210 Hb_124677_050--Hb_007632_210 Hb_005183_150 Hb_005183_150 Hb_124677_050--Hb_005183_150 Hb_002284_260 Hb_002284_260 Hb_124677_050--Hb_002284_260 Hb_002311_090 Hb_002311_090 Hb_124677_050--Hb_002311_090 Hb_003228_050 Hb_003228_050 Hb_124677_050--Hb_003228_050 Hb_024682_030 Hb_024682_030 Hb_003360_010--Hb_024682_030 Hb_000260_670 Hb_000260_670 Hb_003360_010--Hb_000260_670 Hb_000431_100 Hb_000431_100 Hb_003360_010--Hb_000431_100 Hb_001524_120 Hb_001524_120 Hb_003360_010--Hb_001524_120 Hb_003360_010--Hb_005183_150 Hb_007632_210--Hb_005183_150 Hb_000661_150 Hb_000661_150 Hb_007632_210--Hb_000661_150 Hb_007632_210--Hb_002311_090 Hb_007632_210--Hb_003228_050 Hb_101133_050 Hb_101133_050 Hb_007632_210--Hb_101133_050 Hb_033041_010 Hb_033041_010 Hb_005183_150--Hb_033041_010 Hb_005183_150--Hb_001524_120 Hb_007632_080 Hb_007632_080 Hb_005183_150--Hb_007632_080 Hb_093458_020 Hb_093458_020 Hb_002284_260--Hb_093458_020 Hb_004007_130 Hb_004007_130 Hb_002284_260--Hb_004007_130 Hb_002871_130 Hb_002871_130 Hb_002284_260--Hb_002871_130 Hb_002284_260--Hb_003360_010 Hb_000077_110 Hb_000077_110 Hb_002284_260--Hb_000077_110 Hb_002311_090--Hb_101133_050 Hb_000567_290 Hb_000567_290 Hb_002311_090--Hb_000567_290 Hb_012150_040 Hb_012150_040 Hb_002311_090--Hb_012150_040 Hb_002311_090--Hb_000661_150 Hb_002030_130 Hb_002030_130 Hb_003228_050--Hb_002030_130 Hb_003228_050--Hb_001524_120 Hb_003228_050--Hb_101133_050 Hb_000956_050 Hb_000956_050 Hb_003228_050--Hb_000956_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0272447 0.430023 7.67544 4.20542 0 0.189009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.19971 0.274981 0.0743014 1.58774 0.82786

CAGE analysis