Hb_124677_070

Information

Type -
Description -
Location Contig124677: 52671-53360
Sequence    

Annotation

kegg
ID rcu:RCOM_1577240
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_012092766.1
description PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
swissprot
ID Q00874
description DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2
trembl
ID B9RI89
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1577240 PE=4 SV=1
Gene Ontology
ID GO:0016301
description dna-damage-repair toleration protein drt100-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07462: 52158-53690
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124677_070 0.0 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
2 Hb_000742_040 0.0379697194 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
3 Hb_026196_020 0.0545707911 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
4 Hb_000802_040 0.0556301592 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
5 Hb_188742_010 0.0569523551 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
6 Hb_002999_020 0.0658281452 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
7 Hb_010327_040 0.0765759882 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
8 Hb_001416_120 0.0765908022 - - caspase, putative [Ricinus communis]
9 Hb_000796_110 0.0805072905 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]
10 Hb_016734_110 0.0845515627 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
11 Hb_153258_030 0.0906337292 - - hypothetical protein RCOM_0853150 [Ricinus communis]
12 Hb_001369_490 0.0943891653 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 33 [Jatropha curcas]
13 Hb_005666_010 0.0960818698 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
14 Hb_004690_020 0.0973338354 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
15 Hb_000815_010 0.100115938 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica]
16 Hb_004693_040 0.1011462352 - - -
17 Hb_000141_050 0.1058621873 - - hypothetical protein POPTR_0001s00460g [Populus trichocarpa]
18 Hb_001623_560 0.107094984 - - late embryogenesis abundant protein group 9 protein [Arachis hypogaea]
19 Hb_012675_010 0.1071294822 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000896_030 0.1117739989 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_124677_070 Hb_124677_070 Hb_000742_040 Hb_000742_040 Hb_124677_070--Hb_000742_040 Hb_026196_020 Hb_026196_020 Hb_124677_070--Hb_026196_020 Hb_000802_040 Hb_000802_040 Hb_124677_070--Hb_000802_040 Hb_188742_010 Hb_188742_010 Hb_124677_070--Hb_188742_010 Hb_002999_020 Hb_002999_020 Hb_124677_070--Hb_002999_020 Hb_010327_040 Hb_010327_040 Hb_124677_070--Hb_010327_040 Hb_000742_040--Hb_002999_020 Hb_000796_110 Hb_000796_110 Hb_000742_040--Hb_000796_110 Hb_016734_110 Hb_016734_110 Hb_000742_040--Hb_016734_110 Hb_153258_030 Hb_153258_030 Hb_000742_040--Hb_153258_030 Hb_000742_040--Hb_000802_040 Hb_026196_020--Hb_188742_010 Hb_026196_020--Hb_000802_040 Hb_026196_020--Hb_010327_040 Hb_026196_020--Hb_000742_040 Hb_000896_030 Hb_000896_030 Hb_026196_020--Hb_000896_030 Hb_000802_040--Hb_010327_040 Hb_001416_120 Hb_001416_120 Hb_000802_040--Hb_001416_120 Hb_000802_040--Hb_002999_020 Hb_004693_040 Hb_004693_040 Hb_000802_040--Hb_004693_040 Hb_000141_050 Hb_000141_050 Hb_188742_010--Hb_000141_050 Hb_188742_010--Hb_000896_030 Hb_188742_010--Hb_000742_040 Hb_012675_010 Hb_012675_010 Hb_188742_010--Hb_012675_010 Hb_002999_020--Hb_153258_030 Hb_002999_020--Hb_000796_110 Hb_002999_020--Hb_001416_120 Hb_002999_020--Hb_016734_110 Hb_004396_020 Hb_004396_020 Hb_010327_040--Hb_004396_020 Hb_024066_020 Hb_024066_020 Hb_010327_040--Hb_024066_020 Hb_007007_140 Hb_007007_140 Hb_010327_040--Hb_007007_140 Hb_010327_040--Hb_004693_040 Hb_000392_080 Hb_000392_080 Hb_010327_040--Hb_000392_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.319654 48.9359 171.54 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 7.55845

CAGE analysis