Hb_124677_090

Information

Type -
Description -
Location Contig124677: 61030-62373
Sequence    

Annotation

kegg
ID rcu:RCOM_1577270
description hypothetical protein
nr
ID XP_002513461.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9RI92
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1577270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07464: 60606-62515
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124677_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001477_060 0.0622178812 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
3 Hb_008895_020 0.0837331204 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
4 Hb_007357_010 0.0840527479 - - cytochrome P450, putative [Ricinus communis]
5 Hb_001638_340 0.0857937818 - - conserved hypothetical protein [Ricinus communis]
6 Hb_054926_010 0.0981921913 - - glutamate receptor 2 plant, putative [Ricinus communis]
7 Hb_001715_060 0.1121579543 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
8 Hb_007123_010 0.1133570144 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
9 Hb_000103_370 0.1151154505 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
10 Hb_009222_040 0.1163754091 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
11 Hb_007632_230 0.1168507534 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
12 Hb_002626_060 0.1180001881 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
13 Hb_003427_020 0.1181303581 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
14 Hb_002518_220 0.1184634071 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
15 Hb_006196_030 0.1186788417 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
16 Hb_001794_040 0.1270793792 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
17 Hb_039946_060 0.1272462852 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
18 Hb_001277_370 0.1305112375 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
19 Hb_059275_010 0.1318725946 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
20 Hb_000185_130 0.1319506063 - - UBX domain-containing protein 8-B, putative [Ricinus communis]

Gene co-expression network

sample Hb_124677_090 Hb_124677_090 Hb_001477_060 Hb_001477_060 Hb_124677_090--Hb_001477_060 Hb_008895_020 Hb_008895_020 Hb_124677_090--Hb_008895_020 Hb_007357_010 Hb_007357_010 Hb_124677_090--Hb_007357_010 Hb_001638_340 Hb_001638_340 Hb_124677_090--Hb_001638_340 Hb_054926_010 Hb_054926_010 Hb_124677_090--Hb_054926_010 Hb_001715_060 Hb_001715_060 Hb_124677_090--Hb_001715_060 Hb_009222_040 Hb_009222_040 Hb_001477_060--Hb_009222_040 Hb_001477_060--Hb_007357_010 Hb_001477_060--Hb_001638_340 Hb_001477_060--Hb_008895_020 Hb_161103_010 Hb_161103_010 Hb_001477_060--Hb_161103_010 Hb_008895_020--Hb_001638_340 Hb_006651_030 Hb_006651_030 Hb_008895_020--Hb_006651_030 Hb_029977_030 Hb_029977_030 Hb_008895_020--Hb_029977_030 Hb_059275_010 Hb_059275_010 Hb_008895_020--Hb_059275_010 Hb_001277_370 Hb_001277_370 Hb_007357_010--Hb_001277_370 Hb_007357_010--Hb_001715_060 Hb_007632_230 Hb_007632_230 Hb_007357_010--Hb_007632_230 Hb_001221_070 Hb_001221_070 Hb_007357_010--Hb_001221_070 Hb_011574_020 Hb_011574_020 Hb_001638_340--Hb_011574_020 Hb_000012_350 Hb_000012_350 Hb_001638_340--Hb_000012_350 Hb_001638_340--Hb_059275_010 Hb_008019_010 Hb_008019_010 Hb_054926_010--Hb_008019_010 Hb_004040_010 Hb_004040_010 Hb_054926_010--Hb_004040_010 Hb_054926_010--Hb_007632_230 Hb_000103_370 Hb_000103_370 Hb_054926_010--Hb_000103_370 Hb_007123_010 Hb_007123_010 Hb_054926_010--Hb_007123_010 Hb_018134_010 Hb_018134_010 Hb_054926_010--Hb_018134_010 Hb_001715_060--Hb_059275_010 Hb_001715_060--Hb_001638_340 Hb_001715_060--Hb_029977_030 Hb_001715_060--Hb_008895_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.132053 7.04054 11.469 14.5429 0 0.0477301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0354767 0 0 0.301269 5.86802

CAGE analysis