Hb_124755_010

Information

Type -
Description -
Location Contig124755: 4302-7481
Sequence    

Annotation

kegg
ID pop:POPTR_0019s10760g
description POPTRDRAFT_738775; zinc finger family protein
nr
ID XP_012085009.1
description PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
swissprot
ID Q5PPX5
description E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis GN=rnf170 PE=2 SV=1
trembl
ID A0A067JVY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22198 PE=4 SV=1
Gene Ontology
ID GO:0005634
description e3 ubiquitin-protein ligase rnf170-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07508: 4389-5367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124755_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
2 Hb_000024_030 0.0692013779 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
3 Hb_002471_080 0.0718355474 - - oxidoreductase, putative [Ricinus communis]
4 Hb_001307_090 0.0774967916 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
5 Hb_004374_140 0.0785966845 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
6 Hb_000975_110 0.0856844895 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
7 Hb_000122_020 0.0859329204 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]
8 Hb_000046_290 0.086074843 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
9 Hb_000648_020 0.0871758752 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
10 Hb_004336_050 0.088621864 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
11 Hb_011644_030 0.0931458502 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
12 Hb_012490_050 0.0933849619 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]
13 Hb_001461_010 0.0935189825 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
14 Hb_008544_010 0.094103818 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
15 Hb_000364_030 0.0952133218 - - RNA binding protein, putative [Ricinus communis]
16 Hb_005092_060 0.0970552491 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
17 Hb_004449_200 0.0970653792 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
18 Hb_000224_120 0.0971877233 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
19 Hb_002631_020 0.0976426413 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
20 Hb_001360_050 0.0981107446 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_124755_010 Hb_124755_010 Hb_000024_030 Hb_000024_030 Hb_124755_010--Hb_000024_030 Hb_002471_080 Hb_002471_080 Hb_124755_010--Hb_002471_080 Hb_001307_090 Hb_001307_090 Hb_124755_010--Hb_001307_090 Hb_004374_140 Hb_004374_140 Hb_124755_010--Hb_004374_140 Hb_000975_110 Hb_000975_110 Hb_124755_010--Hb_000975_110 Hb_000122_020 Hb_000122_020 Hb_124755_010--Hb_000122_020 Hb_000024_030--Hb_000975_110 Hb_001433_050 Hb_001433_050 Hb_000024_030--Hb_001433_050 Hb_004032_100 Hb_004032_100 Hb_000024_030--Hb_004032_100 Hb_006816_530 Hb_006816_530 Hb_000024_030--Hb_006816_530 Hb_000024_030--Hb_002471_080 Hb_000046_290 Hb_000046_290 Hb_002471_080--Hb_000046_290 Hb_001360_050 Hb_001360_050 Hb_002471_080--Hb_001360_050 Hb_001829_060 Hb_001829_060 Hb_002471_080--Hb_001829_060 Hb_000329_310 Hb_000329_310 Hb_002471_080--Hb_000329_310 Hb_001307_090--Hb_000122_020 Hb_004336_050 Hb_004336_050 Hb_001307_090--Hb_004336_050 Hb_001307_090--Hb_000975_110 Hb_001307_090--Hb_000024_030 Hb_004449_200 Hb_004449_200 Hb_001307_090--Hb_004449_200 Hb_008544_010 Hb_008544_010 Hb_004374_140--Hb_008544_010 Hb_001461_010 Hb_001461_010 Hb_004374_140--Hb_001461_010 Hb_004374_140--Hb_004336_050 Hb_180301_010 Hb_180301_010 Hb_004374_140--Hb_180301_010 Hb_002631_020 Hb_002631_020 Hb_004374_140--Hb_002631_020 Hb_011161_050 Hb_011161_050 Hb_000975_110--Hb_011161_050 Hb_000722_040 Hb_000722_040 Hb_000975_110--Hb_000722_040 Hb_003561_030 Hb_003561_030 Hb_000975_110--Hb_003561_030 Hb_000975_110--Hb_001433_050 Hb_000122_020--Hb_004449_200 Hb_000122_020--Hb_002631_020 Hb_003018_050 Hb_003018_050 Hb_000122_020--Hb_003018_050 Hb_000122_020--Hb_001461_010 Hb_004659_060 Hb_004659_060 Hb_000122_020--Hb_004659_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.93136 3.61202 4.25607 14.727 12.0752 21.7095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.3557 39.9773 31.5322 15.7077 8.66778

CAGE analysis