Hb_124953_020

Information

Type -
Description -
Location Contig124953: 3383-4727
Sequence    

Annotation

kegg
ID rcu:RCOM_1314610
description Mitochondrial import inner membrane translocase subunit Tim13, putative
nr
ID XP_002518947.1
description Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
swissprot
ID Q9XH48
description Mitochondrial import inner membrane translocase subunit TIM13 OS=Arabidopsis thaliana GN=TIM13 PE=1 SV=2
trembl
ID B9RYX8
description Mitochondrial import inner membrane translocase subunit Tim13, putative OS=Ricinus communis GN=RCOM_1314610 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial import inner membrane translocase subunit tim13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07586: 3384-4658 , PASA_asmbl_07587: 4363-4747
cDNA
(Sanger)
(ID:Location)		 004_C18.ab1: 3492-3863 , 017_N14.ab1: 3457-3863 , 045_E10.ab1: 3492-3863 , 052_C02.ab1: 3515-4646

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124953_020 0.0 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
2 Hb_001016_150 0.053270325 - - Rop1 [Hevea brasiliensis]
3 Hb_002078_140 0.0537349884 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
4 Hb_005365_030 0.0712184035 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
5 Hb_004800_060 0.0746611676 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
6 Hb_001863_430 0.0784537544 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
7 Hb_002192_010 0.0827253713 - - -
8 Hb_001341_150 0.0834252875 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
9 Hb_000260_550 0.0834420898 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
10 Hb_001691_140 0.0834789496 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
11 Hb_000610_050 0.086831397 - - skp1, putative [Ricinus communis]
12 Hb_000172_640 0.0880748054 - - hypothetical protein POPTR_0007s06250g [Populus trichocarpa]
13 Hb_000506_070 0.0887262626 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
14 Hb_005773_060 0.0907726598 - - defender against cell death, putative [Ricinus communis]
15 Hb_000217_030 0.0908859328 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
16 Hb_027472_040 0.0921171163 - - SKP1 [Hevea brasiliensis]
17 Hb_029388_020 0.0931619442 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000331_470 0.0936164248 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
19 Hb_007875_030 0.0940483379 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
20 Hb_002105_100 0.0941534397 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_124953_020 Hb_124953_020 Hb_001016_150 Hb_001016_150 Hb_124953_020--Hb_001016_150 Hb_002078_140 Hb_002078_140 Hb_124953_020--Hb_002078_140 Hb_005365_030 Hb_005365_030 Hb_124953_020--Hb_005365_030 Hb_004800_060 Hb_004800_060 Hb_124953_020--Hb_004800_060 Hb_001863_430 Hb_001863_430 Hb_124953_020--Hb_001863_430 Hb_002192_010 Hb_002192_010 Hb_124953_020--Hb_002192_010 Hb_001016_150--Hb_001863_430 Hb_001016_150--Hb_002078_140 Hb_001341_150 Hb_001341_150 Hb_001016_150--Hb_001341_150 Hb_002811_170 Hb_002811_170 Hb_001016_150--Hb_002811_170 Hb_000506_070 Hb_000506_070 Hb_001016_150--Hb_000506_070 Hb_001691_140 Hb_001691_140 Hb_002078_140--Hb_001691_140 Hb_002078_140--Hb_001341_150 Hb_000136_260 Hb_000136_260 Hb_002078_140--Hb_000136_260 Hb_002078_140--Hb_001863_430 Hb_029388_020 Hb_029388_020 Hb_005365_030--Hb_029388_020 Hb_005365_030--Hb_002078_140 Hb_002320_040 Hb_002320_040 Hb_005365_030--Hb_002320_040 Hb_005365_030--Hb_001691_140 Hb_027472_040 Hb_027472_040 Hb_005365_030--Hb_027472_040 Hb_004162_210 Hb_004162_210 Hb_004800_060--Hb_004162_210 Hb_003106_220 Hb_003106_220 Hb_004800_060--Hb_003106_220 Hb_004800_060--Hb_001016_150 Hb_000172_640 Hb_000172_640 Hb_004800_060--Hb_000172_640 Hb_126861_010 Hb_126861_010 Hb_004800_060--Hb_126861_010 Hb_001863_430--Hb_000506_070 Hb_001863_430--Hb_002811_170 Hb_000327_230 Hb_000327_230 Hb_001863_430--Hb_000327_230 Hb_001863_430--Hb_001691_140 Hb_007423_040 Hb_007423_040 Hb_002192_010--Hb_007423_040 Hb_002192_010--Hb_002078_140 Hb_005773_060 Hb_005773_060 Hb_002192_010--Hb_005773_060 Hb_000610_050 Hb_000610_050 Hb_002192_010--Hb_000610_050 Hb_002192_010--Hb_000172_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.4973 25.6548 43.6038 41.35 27.5213 32.1013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.7151 90.7193 28.33 37.7855 12.2684

CAGE analysis