Hb_124996_010

Information

Type -
Description -
Location Contig124996: 25246-29981
Sequence    

Annotation

kegg
ID pop:POPTR_0014s17480g
description POPTRDRAFT_1100193; hypothetical protein
nr
ID XP_002320566.2
description hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IB16
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17480g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07593: 28817-29613
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124996_010 0.0 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
2 Hb_001288_030 0.1754340344 - - -
3 Hb_002157_040 0.2018102025 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
4 Hb_000162_220 0.2158743822 - - nodulin family protein [Populus trichocarpa]
5 Hb_000307_120 0.2316937697 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
6 Hb_000007_200 0.2382853629 - - PREDICTED: choline/ethanolaminephosphotransferase 1 [Jatropha curcas]
7 Hb_000072_210 0.2422021776 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
8 Hb_001117_120 0.2473378158 - - chloride channel clc, putative [Ricinus communis]
9 Hb_003581_300 0.2479837952 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
10 Hb_012807_130 0.2482421644 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
11 Hb_001832_150 0.251222807 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
12 Hb_008206_100 0.2526557196 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
13 Hb_000407_070 0.25340585 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
14 Hb_000390_140 0.2542444951 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
15 Hb_018279_020 0.2542950231 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
16 Hb_000139_470 0.2543764235 - - Dual specificity protein phosphatase, putative [Ricinus communis]
17 Hb_002081_170 0.2548069331 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
18 Hb_158104_020 0.2573434835 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
19 Hb_175933_010 0.2576567147 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
20 Hb_111985_110 0.2587947358 - - thioredoxin H-type 3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_124996_010 Hb_124996_010 Hb_001288_030 Hb_001288_030 Hb_124996_010--Hb_001288_030 Hb_002157_040 Hb_002157_040 Hb_124996_010--Hb_002157_040 Hb_000162_220 Hb_000162_220 Hb_124996_010--Hb_000162_220 Hb_000307_120 Hb_000307_120 Hb_124996_010--Hb_000307_120 Hb_000007_200 Hb_000007_200 Hb_124996_010--Hb_000007_200 Hb_000072_210 Hb_000072_210 Hb_124996_010--Hb_000072_210 Hb_002226_040 Hb_002226_040 Hb_001288_030--Hb_002226_040 Hb_003106_220 Hb_003106_220 Hb_001288_030--Hb_003106_220 Hb_000923_090 Hb_000923_090 Hb_001288_030--Hb_000923_090 Hb_000030_200 Hb_000030_200 Hb_001288_030--Hb_000030_200 Hb_006816_270 Hb_006816_270 Hb_001288_030--Hb_006816_270 Hb_006018_060 Hb_006018_060 Hb_002157_040--Hb_006018_060 Hb_111985_110 Hb_111985_110 Hb_002157_040--Hb_111985_110 Hb_006573_290 Hb_006573_290 Hb_002157_040--Hb_006573_290 Hb_021409_080 Hb_021409_080 Hb_002157_040--Hb_021409_080 Hb_001019_150 Hb_001019_150 Hb_002157_040--Hb_001019_150 Hb_003581_300 Hb_003581_300 Hb_002157_040--Hb_003581_300 Hb_000407_070 Hb_000407_070 Hb_000162_220--Hb_000407_070 Hb_000390_140 Hb_000390_140 Hb_000162_220--Hb_000390_140 Hb_000023_290 Hb_000023_290 Hb_000162_220--Hb_000023_290 Hb_000362_180 Hb_000362_180 Hb_000162_220--Hb_000362_180 Hb_006117_060 Hb_006117_060 Hb_000162_220--Hb_006117_060 Hb_000162_220--Hb_000072_210 Hb_062785_010 Hb_062785_010 Hb_000307_120--Hb_062785_010 Hb_005363_010 Hb_005363_010 Hb_000307_120--Hb_005363_010 Hb_002094_070 Hb_002094_070 Hb_000307_120--Hb_002094_070 Hb_118094_010 Hb_118094_010 Hb_000307_120--Hb_118094_010 Hb_000307_120--Hb_000162_220 Hb_012807_130 Hb_012807_130 Hb_000007_200--Hb_012807_130 Hb_004007_110 Hb_004007_110 Hb_000007_200--Hb_004007_110 Hb_001998_200 Hb_001998_200 Hb_000007_200--Hb_001998_200 Hb_000012_110 Hb_000012_110 Hb_000007_200--Hb_000012_110 Hb_029920_060 Hb_029920_060 Hb_000007_200--Hb_029920_060 Hb_000139_470 Hb_000139_470 Hb_000007_200--Hb_000139_470 Hb_010560_030 Hb_010560_030 Hb_000072_210--Hb_010560_030 Hb_000327_380 Hb_000327_380 Hb_000072_210--Hb_000327_380 Hb_000072_210--Hb_000923_090 Hb_000072_210--Hb_000390_140 Hb_004052_050 Hb_004052_050 Hb_000072_210--Hb_004052_050 Hb_001123_210 Hb_001123_210 Hb_000072_210--Hb_001123_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.256975 1.403 1.00014 6.60072 0.46238 0.337099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.4047 4.04215 0.468546 1.80303 1.61728

CAGE analysis