Hb_125092_020

Information

Type -
Description -
Location Contig125092: 23678-31379
Sequence    

Annotation

kegg
ID rcu:RCOM_0599700
description nucleic acid binding protein, putative
nr
ID XP_012065806.1
description PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q7XTT4
description Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2 SV=2
trembl
ID B9SMB7
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0599700 PE=4 SV=1
Gene Ontology
ID GO:0000166
description nucleolin 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07684: 23648-31300 , PASA_asmbl_07685: 23648-31249
cDNA
(Sanger)
(ID:Location)		 035_L21.ab1: 29318-31300

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_125092_020 0.0 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
2 Hb_000531_090 0.0457605275 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
3 Hb_000331_190 0.0508095635 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
4 Hb_002652_040 0.059113763 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
5 Hb_000035_040 0.0644771885 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
6 Hb_024990_010 0.0673734978 - - PREDICTED: la protein 1 [Jatropha curcas]
7 Hb_000567_010 0.0700773062 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
8 Hb_002893_150 0.0703351175 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
9 Hb_147737_010 0.0738815596 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
10 Hb_000329_130 0.0759363416 - - beta-tubulin cofactor d, putative [Ricinus communis]
11 Hb_000340_160 0.0777288919 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
12 Hb_000343_210 0.0788357292 - - ran-binding protein, putative [Ricinus communis]
13 Hb_046615_020 0.0796599815 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
14 Hb_175338_020 0.0821797022 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
15 Hb_001221_040 0.0829817104 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
16 Hb_010193_050 0.0832288875 - - conserved hypothetical protein [Ricinus communis]
17 Hb_008725_130 0.0833800967 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
18 Hb_000436_040 0.0836610653 - - PREDICTED: transportin-1 [Jatropha curcas]
19 Hb_001196_070 0.0838407057 - - nucleolar protein nop56, putative [Ricinus communis]
20 Hb_003464_020 0.0845970813 - - srpk, putative [Ricinus communis]

Gene co-expression network

sample Hb_125092_020 Hb_125092_020 Hb_000531_090 Hb_000531_090 Hb_125092_020--Hb_000531_090 Hb_000331_190 Hb_000331_190 Hb_125092_020--Hb_000331_190 Hb_002652_040 Hb_002652_040 Hb_125092_020--Hb_002652_040 Hb_000035_040 Hb_000035_040 Hb_125092_020--Hb_000035_040 Hb_024990_010 Hb_024990_010 Hb_125092_020--Hb_024990_010 Hb_000567_010 Hb_000567_010 Hb_125092_020--Hb_000567_010 Hb_002893_150 Hb_002893_150 Hb_000531_090--Hb_002893_150 Hb_000789_080 Hb_000789_080 Hb_000531_090--Hb_000789_080 Hb_000531_090--Hb_000035_040 Hb_000343_210 Hb_000343_210 Hb_000531_090--Hb_000343_210 Hb_147737_010 Hb_147737_010 Hb_000531_090--Hb_147737_010 Hb_000331_190--Hb_002652_040 Hb_000331_190--Hb_024990_010 Hb_000331_190--Hb_000035_040 Hb_000331_190--Hb_000567_010 Hb_000340_160 Hb_000340_160 Hb_000331_190--Hb_000340_160 Hb_002652_040--Hb_000035_040 Hb_000424_010 Hb_000424_010 Hb_002652_040--Hb_000424_010 Hb_002883_010 Hb_002883_010 Hb_002652_040--Hb_002883_010 Hb_175338_020 Hb_175338_020 Hb_002652_040--Hb_175338_020 Hb_000035_040--Hb_000424_010 Hb_031754_010 Hb_031754_010 Hb_000035_040--Hb_031754_010 Hb_002043_170 Hb_002043_170 Hb_000035_040--Hb_002043_170 Hb_024990_010--Hb_000531_090 Hb_024990_010--Hb_000340_160 Hb_001221_040 Hb_001221_040 Hb_024990_010--Hb_001221_040 Hb_007668_040 Hb_007668_040 Hb_024990_010--Hb_007668_040 Hb_003124_130 Hb_003124_130 Hb_000567_010--Hb_003124_130 Hb_010193_050 Hb_010193_050 Hb_000567_010--Hb_010193_050 Hb_005494_020 Hb_005494_020 Hb_000567_010--Hb_005494_020 Hb_000567_010--Hb_147737_010 Hb_000768_110 Hb_000768_110 Hb_000567_010--Hb_000768_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
164.124 70.3259 58.2117 40.7062 149.465 188.166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.1821 43.8909 60.4709 85.7012 44.8677

CAGE analysis