Hb_125116_020

Information

Type -
Description -
Location Contig125116: 4775-6908
Sequence    

Annotation

kegg
ID rcu:RCOM_0586540
description receptor protein kinase, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_010999658.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X5 [Populus euphratica]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID B9SAG6
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_0586540 PE=4 SV=1
Gene Ontology
ID GO:0016301
description leucine-rich repeat receptor-like protein kinase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_125116_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X5 [Populus euphratica]
2 Hb_005843_060 0.0684793557 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X3 [Nelumbo nucifera]
3 Hb_003462_170 0.1306281864 - - unnamed protein product [Vitis vinifera]
4 Hb_010964_030 0.1560760384 - - PREDICTED: uncharacterized protein LOC105647958 [Jatropha curcas]
5 Hb_001981_020 0.1590227341 - - PREDICTED: xanthine dehydrogenase 1-like isoform X1 [Populus euphratica]
6 Hb_167457_010 0.1603177157 - - hypothetical protein glysoja_045622, partial [Glycine soja]
7 Hb_004052_060 0.1639210347 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
8 Hb_010129_020 0.167167247 - - cytochrome P450, putative [Ricinus communis]
9 Hb_003186_050 0.1679435487 - - -
10 Hb_016835_020 0.1698813263 - - unnamed protein product [Coffea canephora]
11 Hb_029727_010 0.1709841996 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_030987_010 0.1754147226 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_030885_010 0.1770688813 - - -
14 Hb_000567_270 0.1813083877 - - hypothetical protein L484_017162 [Morus notabilis]
15 Hb_004129_180 0.1817150322 - - hypothetical protein JCGZ_11090 [Jatropha curcas]
16 Hb_000169_100 0.1933335029 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
17 Hb_188163_010 0.1955174191 - - hypothetical protein CISIN_1g048732mg [Citrus sinensis]
18 Hb_109791_010 0.1992212031 - - -
19 Hb_000684_460 0.199243889 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
20 Hb_115868_030 0.1992610446 - - Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_125116_020 Hb_125116_020 Hb_005843_060 Hb_005843_060 Hb_125116_020--Hb_005843_060 Hb_003462_170 Hb_003462_170 Hb_125116_020--Hb_003462_170 Hb_010964_030 Hb_010964_030 Hb_125116_020--Hb_010964_030 Hb_001981_020 Hb_001981_020 Hb_125116_020--Hb_001981_020 Hb_167457_010 Hb_167457_010 Hb_125116_020--Hb_167457_010 Hb_004052_060 Hb_004052_060 Hb_125116_020--Hb_004052_060 Hb_016835_020 Hb_016835_020 Hb_005843_060--Hb_016835_020 Hb_005843_060--Hb_003462_170 Hb_005843_060--Hb_167457_010 Hb_003186_050 Hb_003186_050 Hb_005843_060--Hb_003186_050 Hb_029727_010 Hb_029727_010 Hb_005843_060--Hb_029727_010 Hb_001699_020 Hb_001699_020 Hb_003462_170--Hb_001699_020 Hb_006455_020 Hb_006455_020 Hb_003462_170--Hb_006455_020 Hb_003462_170--Hb_001981_020 Hb_000644_020 Hb_000644_020 Hb_003462_170--Hb_000644_020 Hb_030987_010 Hb_030987_010 Hb_010964_030--Hb_030987_010 Hb_000907_050 Hb_000907_050 Hb_010964_030--Hb_000907_050 Hb_003772_010 Hb_003772_010 Hb_010964_030--Hb_003772_010 Hb_010964_030--Hb_001981_020 Hb_186580_020 Hb_186580_020 Hb_010964_030--Hb_186580_020 Hb_027970_010 Hb_027970_010 Hb_010964_030--Hb_027970_010 Hb_001981_020--Hb_030987_010 Hb_062192_050 Hb_062192_050 Hb_001981_020--Hb_062192_050 Hb_001981_020--Hb_000907_050 Hb_167457_010--Hb_003186_050 Hb_011476_010 Hb_011476_010 Hb_167457_010--Hb_011476_010 Hb_004274_010 Hb_004274_010 Hb_167457_010--Hb_004274_010 Hb_001452_150 Hb_001452_150 Hb_167457_010--Hb_001452_150 Hb_000946_130 Hb_000946_130 Hb_167457_010--Hb_000946_130 Hb_009848_060 Hb_009848_060 Hb_004052_060--Hb_009848_060 Hb_095835_010 Hb_095835_010 Hb_004052_060--Hb_095835_010 Hb_010129_020 Hb_010129_020 Hb_004052_060--Hb_010129_020 Hb_004052_060--Hb_005843_060 Hb_004052_060--Hb_029727_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0107467 0.0426664 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.206729 0.432284

CAGE analysis