Hb_125781_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig125781: 1363-2679
Sequence    

Annotation

kegg
ID rcu:RCOM_1259530
description NAC domain-containing protein, putative
nr
ID XP_002530539.1
description NAC domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9FMR3
description NAC domain-containing protein 90 OS=Arabidopsis thaliana GN=NAC090 PE=2 SV=1
trembl
ID B9SX20
description NAC domain-containing protein, putative OS=Ricinus communis GN=RCOM_1259530 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 90-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_125781_010 0.0 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
2 Hb_022845_010 0.1170090865 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
3 Hb_022465_010 0.1261408 - - hypothetical protein JCGZ_06012 [Jatropha curcas]
4 Hb_120289_010 0.1265094945 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
5 Hb_000700_020 0.1297784194 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
6 Hb_000654_060 0.1316237933 - - hypothetical protein CICLE_v10027550mg [Citrus clementina]
7 Hb_000056_290 0.132445623 - - conserved hypothetical protein [Ricinus communis]
8 Hb_034498_010 0.1408693454 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
9 Hb_001322_220 0.1470217609 - - Major pollen allergen Ory s 1 precursor, putative [Ricinus communis]
10 Hb_000162_160 0.1484500503 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
11 Hb_001329_050 0.1486135635 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001190_030 0.1553761036 - - hypothetical protein VITISV_017115 [Vitis vinifera]
13 Hb_064194_010 0.1586306504 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
14 Hb_177179_020 0.1588580426 - - conserved hypothetical protein [Ricinus communis]
15 Hb_109304_010 0.1607460412 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
16 Hb_006197_010 0.1614204677 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
17 Hb_118282_020 0.1622413413 - - PREDICTED: uncharacterized protein LOC105631532 isoform X3 [Jatropha curcas]
18 Hb_000483_120 0.1627475438 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
19 Hb_000527_020 0.1632413804 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
20 Hb_001152_040 0.1639160731 - - peripheral-type benzodiazepine receptor, putative [Ricinus communis]

Gene co-expression network

sample Hb_125781_010 Hb_125781_010 Hb_022845_010 Hb_022845_010 Hb_125781_010--Hb_022845_010 Hb_022465_010 Hb_022465_010 Hb_125781_010--Hb_022465_010 Hb_120289_010 Hb_120289_010 Hb_125781_010--Hb_120289_010 Hb_000700_020 Hb_000700_020 Hb_125781_010--Hb_000700_020 Hb_000654_060 Hb_000654_060 Hb_125781_010--Hb_000654_060 Hb_000056_290 Hb_000056_290 Hb_125781_010--Hb_000056_290 Hb_001322_220 Hb_001322_220 Hb_022845_010--Hb_001322_220 Hb_001190_030 Hb_001190_030 Hb_022845_010--Hb_001190_030 Hb_022845_010--Hb_000654_060 Hb_022845_010--Hb_120289_010 Hb_152528_010 Hb_152528_010 Hb_022845_010--Hb_152528_010 Hb_000162_160 Hb_000162_160 Hb_022845_010--Hb_000162_160 Hb_023712_020 Hb_023712_020 Hb_022465_010--Hb_023712_020 Hb_006197_010 Hb_006197_010 Hb_022465_010--Hb_006197_010 Hb_057721_010 Hb_057721_010 Hb_022465_010--Hb_057721_010 Hb_022465_010--Hb_000654_060 Hb_001398_110 Hb_001398_110 Hb_022465_010--Hb_001398_110 Hb_177179_020 Hb_177179_020 Hb_022465_010--Hb_177179_020 Hb_120289_010--Hb_000056_290 Hb_120289_010--Hb_000162_160 Hb_120289_010--Hb_000700_020 Hb_001329_050 Hb_001329_050 Hb_120289_010--Hb_001329_050 Hb_120289_010--Hb_001322_220 Hb_064194_010 Hb_064194_010 Hb_000700_020--Hb_064194_010 Hb_000700_020--Hb_000056_290 Hb_109304_010 Hb_109304_010 Hb_000700_020--Hb_109304_010 Hb_000700_020--Hb_000162_160 Hb_128392_010 Hb_128392_010 Hb_000700_020--Hb_128392_010 Hb_000654_060--Hb_152528_010 Hb_000756_030 Hb_000756_030 Hb_000654_060--Hb_000756_030 Hb_108744_010 Hb_108744_010 Hb_000654_060--Hb_108744_010 Hb_000654_060--Hb_001398_110 Hb_000056_290--Hb_001329_050 Hb_006573_310 Hb_006573_310 Hb_000056_290--Hb_006573_310 Hb_000933_040 Hb_000933_040 Hb_000056_290--Hb_000933_040 Hb_078448_010 Hb_078448_010 Hb_000056_290--Hb_078448_010 Hb_000527_020 Hb_000527_020 Hb_000056_290--Hb_000527_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.343361 4.2608 3.37594 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.129821 0.0301379 0

CAGE analysis