Hb_125847_010

Information

Type -
Description -
Location Contig125847: 239-566
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_125847_010 0.0 - - -
2 Hb_000430_010 0.0161601612 - - -
3 Hb_162126_010 0.0354812656 - - -
4 Hb_168311_010 0.0572547514 - - -
5 Hb_000139_440 0.0799395311 - - unnamed protein product [Coffea canephora]
6 Hb_000590_020 0.0907190885 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
7 Hb_047040_010 0.0953368945 - - integrase [Gossypium herbaceum]
8 Hb_008246_050 0.0985460533 - - -
9 Hb_005799_040 0.0985920704 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
10 Hb_022206_060 0.103582716 - - -
11 Hb_048874_010 0.1048460776 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
12 Hb_169574_010 0.1073813133 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]
13 Hb_090826_010 0.1079294723 - - PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]
14 Hb_030928_010 0.1126258136 - - -
15 Hb_181535_010 0.11331745 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_000351_030 0.1156713477 - - putative NBS-LRR type disease resistance protein [Prunus persica]
17 Hb_139388_010 0.1159849788 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
18 Hb_001110_020 0.1165099707 - - hypothetical protein JCGZ_03693 [Jatropha curcas]
19 Hb_149358_010 0.1187388397 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_083493_050 0.1201079564 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_125847_010 Hb_125847_010 Hb_000430_010 Hb_000430_010 Hb_125847_010--Hb_000430_010 Hb_162126_010 Hb_162126_010 Hb_125847_010--Hb_162126_010 Hb_168311_010 Hb_168311_010 Hb_125847_010--Hb_168311_010 Hb_000139_440 Hb_000139_440 Hb_125847_010--Hb_000139_440 Hb_000590_020 Hb_000590_020 Hb_125847_010--Hb_000590_020 Hb_047040_010 Hb_047040_010 Hb_125847_010--Hb_047040_010 Hb_000430_010--Hb_162126_010 Hb_000430_010--Hb_168311_010 Hb_008246_050 Hb_008246_050 Hb_000430_010--Hb_008246_050 Hb_005799_040 Hb_005799_040 Hb_000430_010--Hb_005799_040 Hb_048874_010 Hb_048874_010 Hb_000430_010--Hb_048874_010 Hb_162126_010--Hb_008246_050 Hb_162126_010--Hb_005799_040 Hb_162126_010--Hb_048874_010 Hb_169574_010 Hb_169574_010 Hb_162126_010--Hb_169574_010 Hb_168311_010--Hb_000139_440 Hb_168311_010--Hb_000590_020 Hb_168311_010--Hb_047040_010 Hb_022206_060 Hb_022206_060 Hb_168311_010--Hb_022206_060 Hb_090826_010 Hb_090826_010 Hb_168311_010--Hb_090826_010 Hb_030928_010 Hb_030928_010 Hb_168311_010--Hb_030928_010 Hb_000139_440--Hb_000590_020 Hb_000139_440--Hb_047040_010 Hb_000139_440--Hb_022206_060 Hb_000139_440--Hb_090826_010 Hb_000139_440--Hb_030928_010 Hb_000590_020--Hb_047040_010 Hb_000590_020--Hb_022206_060 Hb_000590_020--Hb_090826_010 Hb_000590_020--Hb_030928_010 Hb_181535_010 Hb_181535_010 Hb_000590_020--Hb_181535_010 Hb_047040_010--Hb_022206_060 Hb_047040_010--Hb_090826_010 Hb_047040_010--Hb_030928_010 Hb_047040_010--Hb_181535_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.30561 0.96626 0

CAGE analysis