Hb_125935_010

Information

Type -
Description -
Location Contig125935: 32-1033
Sequence    

Annotation

kegg
ID egr:104420318
description uncharacterized LOC104420318
nr
ID XP_009625019.1
description PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID M1DF56
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_125935_010 0.0 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
2 Hb_003788_060 0.300594838 - - PREDICTED: protein MKS1-like [Populus euphratica]
3 Hb_036790_010 0.3297941205 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
4 Hb_001369_280 0.3303040249 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like isoform X3 [Solanum tuberosum]
5 Hb_000496_090 0.3311691975 - - PREDICTED: inhibitor of trypsin and hageman factor-like [Gossypium raimondii]
6 Hb_022137_030 0.3340264847 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
7 Hb_002740_020 0.3354111165 - - -
8 Hb_115472_010 0.3362682114 - - -
9 Hb_172503_010 0.3393164666 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
10 Hb_103832_030 0.3394937387 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
11 Hb_083103_030 0.3403687634 - - putative retrotransposon protein [Malus domestica]
12 Hb_001995_020 0.3410750307 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
13 Hb_012368_060 0.3782206832 - - -
14 Hb_011457_060 0.378410293 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
15 Hb_001999_110 0.378876235 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
16 Hb_000635_120 0.3789296007 - - -
17 Hb_035492_010 0.3805749509 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
18 Hb_002383_060 0.3892033143 - - PREDICTED: uncharacterized protein LOC102596491 [Solanum tuberosum]
19 Hb_010267_010 0.3907265401 - - -
20 Hb_010120_010 0.3911705768 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]

Gene co-expression network

sample Hb_125935_010 Hb_125935_010 Hb_003788_060 Hb_003788_060 Hb_125935_010--Hb_003788_060 Hb_036790_010 Hb_036790_010 Hb_125935_010--Hb_036790_010 Hb_001369_280 Hb_001369_280 Hb_125935_010--Hb_001369_280 Hb_000496_090 Hb_000496_090 Hb_125935_010--Hb_000496_090 Hb_022137_030 Hb_022137_030 Hb_125935_010--Hb_022137_030 Hb_002740_020 Hb_002740_020 Hb_125935_010--Hb_002740_020 Hb_012654_030 Hb_012654_030 Hb_003788_060--Hb_012654_030 Hb_000758_040 Hb_000758_040 Hb_003788_060--Hb_000758_040 Hb_113250_010 Hb_113250_010 Hb_003788_060--Hb_113250_010 Hb_005389_130 Hb_005389_130 Hb_003788_060--Hb_005389_130 Hb_001994_010 Hb_001994_010 Hb_003788_060--Hb_001994_010 Hb_036790_010--Hb_001369_280 Hb_036790_010--Hb_000496_090 Hb_036790_010--Hb_022137_030 Hb_036790_010--Hb_002740_020 Hb_115472_010 Hb_115472_010 Hb_036790_010--Hb_115472_010 Hb_172503_010 Hb_172503_010 Hb_036790_010--Hb_172503_010 Hb_001369_280--Hb_000496_090 Hb_001369_280--Hb_022137_030 Hb_001369_280--Hb_002740_020 Hb_001369_280--Hb_115472_010 Hb_001369_280--Hb_172503_010 Hb_000496_090--Hb_022137_030 Hb_000496_090--Hb_002740_020 Hb_000496_090--Hb_115472_010 Hb_000496_090--Hb_172503_010 Hb_022137_030--Hb_002740_020 Hb_022137_030--Hb_115472_010 Hb_022137_030--Hb_172503_010 Hb_103832_030 Hb_103832_030 Hb_022137_030--Hb_103832_030 Hb_083103_030 Hb_083103_030 Hb_022137_030--Hb_083103_030 Hb_002740_020--Hb_115472_010 Hb_002740_020--Hb_172503_010 Hb_002740_020--Hb_103832_030 Hb_002740_020--Hb_083103_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0240972 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0433058 0 0.0523341 0

CAGE analysis