Hb_125948_020

Information

Type -
Description -
Location Contig125948: 15069-19956
Sequence    

Annotation

kegg
ID rcu:RCOM_0683560
description phosphoinositide 5-phosphatase, putative
nr
ID XP_002529169.1
description phosphoinositide 5-phosphatase, putative [Ricinus communis]
swissprot
ID Q94A27
description Phosphoinositide phosphatase SAC2 OS=Arabidopsis thaliana GN=SAC2 PE=2 SV=1
trembl
ID B9ST50
description Phosphoinositide 5-phosphatase, putative OS=Ricinus communis GN=RCOM_0683560 PE=4 SV=1
Gene Ontology
ID GO:0042578
description phosphoinositide phosphatase sac2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_125948_020 0.0 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
2 Hb_023528_010 0.1623869178 - - hypothetical protein POPTR_0013s01580g [Populus trichocarpa]
3 Hb_007943_010 0.1773424858 - - -
4 Hb_004529_020 0.189327118 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
5 Hb_003392_010 0.1911151551 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
6 Hb_049827_010 0.1922730836 - - PREDICTED: uncharacterized protein LOC105762110 [Gossypium raimondii]
7 Hb_004846_170 0.1934274727 - - heat-shock protein 70 [Hevea brasiliensis]
8 Hb_006387_010 0.1936839489 - - PREDICTED: uncharacterized protein LOC105649124 [Jatropha curcas]
9 Hb_001863_210 0.1972344171 - - -
10 Hb_185830_100 0.1978919695 - - -
11 Hb_002708_010 0.1986309722 - - -
12 Hb_102355_010 0.2087371808 - - PREDICTED: uncharacterized protein LOC104094591, partial [Nicotiana tomentosiformis]
13 Hb_086484_010 0.2109357658 - - PREDICTED: uncharacterized protein LOC101259761 [Solanum lycopersicum]
14 Hb_003793_050 0.2116047857 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
15 Hb_079297_010 0.219389054 - - hypothetical protein VITISV_012409 [Vitis vinifera]
16 Hb_001269_560 0.2210862299 - - heat-shock protein 70 [Hevea brasiliensis]
17 Hb_003637_030 0.2225166921 - - -
18 Hb_092043_020 0.2304603771 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
19 Hb_038190_040 0.246196461 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
20 Hb_000488_030 0.2633686573 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_125948_020 Hb_125948_020 Hb_023528_010 Hb_023528_010 Hb_125948_020--Hb_023528_010 Hb_007943_010 Hb_007943_010 Hb_125948_020--Hb_007943_010 Hb_004529_020 Hb_004529_020 Hb_125948_020--Hb_004529_020 Hb_003392_010 Hb_003392_010 Hb_125948_020--Hb_003392_010 Hb_049827_010 Hb_049827_010 Hb_125948_020--Hb_049827_010 Hb_004846_170 Hb_004846_170 Hb_125948_020--Hb_004846_170 Hb_023528_010--Hb_004529_020 Hb_092043_020 Hb_092043_020 Hb_023528_010--Hb_092043_020 Hb_003793_050 Hb_003793_050 Hb_023528_010--Hb_003793_050 Hb_023528_010--Hb_007943_010 Hb_001104_040 Hb_001104_040 Hb_023528_010--Hb_001104_040 Hb_007943_010--Hb_003392_010 Hb_007943_010--Hb_049827_010 Hb_006387_010 Hb_006387_010 Hb_007943_010--Hb_006387_010 Hb_001863_210 Hb_001863_210 Hb_007943_010--Hb_001863_210 Hb_185830_100 Hb_185830_100 Hb_007943_010--Hb_185830_100 Hb_002708_010 Hb_002708_010 Hb_007943_010--Hb_002708_010 Hb_004529_020--Hb_092043_020 Hb_004529_020--Hb_001104_040 Hb_004529_020--Hb_003793_050 Hb_004529_020--Hb_007943_010 Hb_003392_010--Hb_049827_010 Hb_003392_010--Hb_006387_010 Hb_003392_010--Hb_001863_210 Hb_003392_010--Hb_185830_100 Hb_003392_010--Hb_002708_010 Hb_102355_010 Hb_102355_010 Hb_003392_010--Hb_102355_010 Hb_049827_010--Hb_006387_010 Hb_049827_010--Hb_001863_210 Hb_049827_010--Hb_185830_100 Hb_049827_010--Hb_002708_010 Hb_049827_010--Hb_102355_010 Hb_000684_340 Hb_000684_340 Hb_004846_170--Hb_000684_340 Hb_001269_560 Hb_001269_560 Hb_004846_170--Hb_001269_560 Hb_079297_010 Hb_079297_010 Hb_004846_170--Hb_079297_010 Hb_003637_030 Hb_003637_030 Hb_004846_170--Hb_003637_030 Hb_086484_010 Hb_086484_010 Hb_004846_170--Hb_086484_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0901585 1.76647 0.0103445 0 3.03467 0.0487558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0498254 0 0.00994582 0.104184

CAGE analysis