Hb_126103_010

Information

Type -
Description -
Location Contig126103: 1-870
Sequence    

Annotation

kegg
ID tcc:TCM_046052
description Phosphoprotein phosphatase
nr
ID XP_007099576.1
description Phosphoprotein phosphatase [Theobroma cacao]
swissprot
ID -
description -
trembl
ID S1S434
description Phosphoprotein phosphatase OS=Theobroma cacao GN=TCM_046052 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07950: 5-481
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126103_010 0.0 - - Phosphoprotein phosphatase [Theobroma cacao]
2 Hb_003371_140 0.1399117949 - - hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
3 Hb_147873_010 0.1464654775 - - PREDICTED: uncharacterized protein LOC102595311 [Solanum tuberosum]
4 Hb_001230_020 0.1543850121 - - hypothetical protein POPTR_0001s31610g [Populus trichocarpa]
5 Hb_002078_090 0.1553194937 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_001863_450 0.1585465912 - - cryptochrome 1.2 [Populus tremula]
7 Hb_136660_010 0.1641776157 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_002995_030 0.1757603105 - - conserved hypothetical protein [Ricinus communis]
9 Hb_072276_010 0.1853449728 - - PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]
10 Hb_012812_010 0.1885738814 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Morus notabilis]
11 Hb_006718_040 0.189494865 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
12 Hb_002686_400 0.1944647402 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
13 Hb_000866_370 0.1947560943 - - synaptotagmin, putative [Ricinus communis]
14 Hb_001410_010 0.1964843807 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
15 Hb_008253_040 0.2002180656 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
16 Hb_060909_010 0.2004619954 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
17 Hb_001242_190 0.2011704201 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
18 Hb_004648_100 0.2037316613 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
19 Hb_007007_070 0.2038849618 transcription factor TF Family: TCP hypothetical protein MIMGU_mgv1a022855mg, partial [Erythranthe guttata]
20 Hb_000120_160 0.2049957816 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_126103_010 Hb_126103_010 Hb_003371_140 Hb_003371_140 Hb_126103_010--Hb_003371_140 Hb_147873_010 Hb_147873_010 Hb_126103_010--Hb_147873_010 Hb_001230_020 Hb_001230_020 Hb_126103_010--Hb_001230_020 Hb_002078_090 Hb_002078_090 Hb_126103_010--Hb_002078_090 Hb_001863_450 Hb_001863_450 Hb_126103_010--Hb_001863_450 Hb_136660_010 Hb_136660_010 Hb_126103_010--Hb_136660_010 Hb_003371_140--Hb_001863_450 Hb_006501_170 Hb_006501_170 Hb_003371_140--Hb_006501_170 Hb_000589_220 Hb_000589_220 Hb_003371_140--Hb_000589_220 Hb_004466_070 Hb_004466_070 Hb_003371_140--Hb_004466_070 Hb_003142_090 Hb_003142_090 Hb_003371_140--Hb_003142_090 Hb_147873_010--Hb_136660_010 Hb_060909_010 Hb_060909_010 Hb_147873_010--Hb_060909_010 Hb_147873_010--Hb_002078_090 Hb_002475_130 Hb_002475_130 Hb_147873_010--Hb_002475_130 Hb_000233_100 Hb_000233_100 Hb_147873_010--Hb_000233_100 Hb_012812_010 Hb_012812_010 Hb_001230_020--Hb_012812_010 Hb_000126_040 Hb_000126_040 Hb_001230_020--Hb_000126_040 Hb_072276_010 Hb_072276_010 Hb_001230_020--Hb_072276_010 Hb_000032_020 Hb_000032_020 Hb_001230_020--Hb_000032_020 Hb_001195_730 Hb_001195_730 Hb_001230_020--Hb_001195_730 Hb_010261_030 Hb_010261_030 Hb_002078_090--Hb_010261_030 Hb_062229_010 Hb_062229_010 Hb_002078_090--Hb_062229_010 Hb_006718_040 Hb_006718_040 Hb_002078_090--Hb_006718_040 Hb_002078_090--Hb_000032_020 Hb_004166_010 Hb_004166_010 Hb_001863_450--Hb_004166_010 Hb_001863_450--Hb_004466_070 Hb_033642_070 Hb_033642_070 Hb_001863_450--Hb_033642_070 Hb_008253_040 Hb_008253_040 Hb_001863_450--Hb_008253_040 Hb_000172_080 Hb_000172_080 Hb_001863_450--Hb_000172_080 Hb_136660_010--Hb_060909_010 Hb_001408_150 Hb_001408_150 Hb_136660_010--Hb_001408_150 Hb_001921_010 Hb_001921_010 Hb_136660_010--Hb_001921_010 Hb_012018_010 Hb_012018_010 Hb_136660_010--Hb_012018_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.13601 16.6921 0.993134 2.02097 0.330271 0.756929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.493694 0.388173 1.69995 4.67413 5.21414

CAGE analysis