Hb_126216_010

Information

Type -
Description -
Location Contig126216: 2-421
Sequence    

Annotation

kegg
ID rcu:RCOM_1315040
description 60S ribosomal protein L9, putative
nr
ID XP_012070542.1
description PREDICTED: 60S ribosomal protein L9 [Jatropha curcas]
swissprot
ID P30707
description 60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1
trembl
ID A0A067LP78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10134 PE=4 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126216_010 0.0 - - PREDICTED: 60S ribosomal protein L9 [Jatropha curcas]
2 Hb_001951_270 0.0912768494 - - -
3 Hb_000975_250 0.1122986894 - - PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Jatropha curcas]
4 Hb_009659_010 0.1238094351 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Vitis vinifera]
5 Hb_000565_030 0.1253486845 - - PREDICTED: 40S ribosomal protein S26-3-like [Jatropha curcas]
6 Hb_000045_250 0.1326992613 - - PREDICTED: uncharacterized protein LOC105646572 isoform X1 [Jatropha curcas]
7 Hb_012251_010 0.1372348167 - - -
8 Hb_001214_140 0.1415753666 - - 60S ribosomal protein L27a, putative [Ricinus communis]
9 Hb_000046_560 0.1415923662 - - PREDICTED: uncharacterized protein LOC105118519 [Populus euphratica]
10 Hb_003988_040 0.1431764439 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
11 Hb_000438_220 0.1447237759 - - PREDICTED: uncharacterized protein LOC105649213 [Jatropha curcas]
12 Hb_009476_020 0.1452837315 - - tryptophan biosynthesis protein, putative [Ricinus communis]
13 Hb_003607_170 0.1459915923 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
14 Hb_007416_020 0.1461016886 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
15 Hb_003226_210 0.1466080023 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
16 Hb_002316_060 0.147110715 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
17 Hb_000948_210 0.1478595798 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
18 Hb_001214_160 0.1488439889 - - 60S ribosomal protein L27B [Hevea brasiliensis]
19 Hb_033153_090 0.1495939935 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
20 Hb_002742_050 0.1501849663 - - hypothetical protein CICLE_v10002863mg [Citrus clementina]

Gene co-expression network

sample Hb_126216_010 Hb_126216_010 Hb_001951_270 Hb_001951_270 Hb_126216_010--Hb_001951_270 Hb_000975_250 Hb_000975_250 Hb_126216_010--Hb_000975_250 Hb_009659_010 Hb_009659_010 Hb_126216_010--Hb_009659_010 Hb_000565_030 Hb_000565_030 Hb_126216_010--Hb_000565_030 Hb_000045_250 Hb_000045_250 Hb_126216_010--Hb_000045_250 Hb_012251_010 Hb_012251_010 Hb_126216_010--Hb_012251_010 Hb_001951_270--Hb_009659_010 Hb_000645_190 Hb_000645_190 Hb_001951_270--Hb_000645_190 Hb_003607_170 Hb_003607_170 Hb_001951_270--Hb_003607_170 Hb_026398_010 Hb_026398_010 Hb_001951_270--Hb_026398_010 Hb_001951_270--Hb_000975_250 Hb_001080_080 Hb_001080_080 Hb_000975_250--Hb_001080_080 Hb_000975_250--Hb_003607_170 Hb_000948_190 Hb_000948_190 Hb_000975_250--Hb_000948_190 Hb_000617_090 Hb_000617_090 Hb_000975_250--Hb_000617_090 Hb_144598_020 Hb_144598_020 Hb_000975_250--Hb_144598_020 Hb_004421_020 Hb_004421_020 Hb_009659_010--Hb_004421_020 Hb_021924_010 Hb_021924_010 Hb_009659_010--Hb_021924_010 Hb_003988_040 Hb_003988_040 Hb_009659_010--Hb_003988_040 Hb_009659_010--Hb_000975_250 Hb_000157_090 Hb_000157_090 Hb_000565_030--Hb_000157_090 Hb_009486_150 Hb_009486_150 Hb_000565_030--Hb_009486_150 Hb_004052_020 Hb_004052_020 Hb_000565_030--Hb_004052_020 Hb_002742_050 Hb_002742_050 Hb_000565_030--Hb_002742_050 Hb_012573_070 Hb_012573_070 Hb_000565_030--Hb_012573_070 Hb_001314_100 Hb_001314_100 Hb_000565_030--Hb_001314_100 Hb_000045_250--Hb_012251_010 Hb_000203_020 Hb_000203_020 Hb_000045_250--Hb_000203_020 Hb_000134_070 Hb_000134_070 Hb_000045_250--Hb_000134_070 Hb_003226_210 Hb_003226_210 Hb_000045_250--Hb_003226_210 Hb_007416_020 Hb_007416_020 Hb_000045_250--Hb_007416_020 Hb_001882_070 Hb_001882_070 Hb_000045_250--Hb_001882_070 Hb_012251_010--Hb_000203_020 Hb_174865_010 Hb_174865_010 Hb_012251_010--Hb_174865_010 Hb_000948_220 Hb_000948_220 Hb_012251_010--Hb_000948_220 Hb_000915_120 Hb_000915_120 Hb_012251_010--Hb_000915_120 Hb_000042_260 Hb_000042_260 Hb_012251_010--Hb_000042_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.11 15.148 22.5067 24.7876 5.08805 48.9553
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.5212 117.201 20.2839 11.0365 10.5795

CAGE analysis