Hb_126395_010

Information

Type -
Description -
Location Contig126395: 11-864
Sequence    

Annotation

kegg
ID csv:101218085
description uncharacterized LOC101218085
nr
ID CAN74955.1
description hypothetical protein VITISV_043980 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BSC8
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126395_010 0.0 - - hypothetical protein VITISV_043980 [Vitis vinifera]
2 Hb_002248_040 0.1980300587 - - conserved hypothetical protein [Ricinus communis]
3 Hb_115031_030 0.2472688656 - - ribosomal protein S12 (chloroplast) [Camellia sinensis]
4 Hb_003388_070 0.2717490668 - - 60S ribosomal protein L32A [Hevea brasiliensis]
5 Hb_005656_130 0.2785552455 - - PREDICTED: calmodulin-like protein 7 [Jatropha curcas]
6 Hb_007595_060 0.2785932112 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001706_030 0.2896718538 - - PREDICTED: uncharacterized protein LOC104880364 [Vitis vinifera]
8 Hb_000457_190 0.3167427734 - - -
9 Hb_020469_010 0.3202631603 - - -
10 Hb_145745_040 0.3400208736 - - Cell wall-associated hydrolase [Medicago truncatula]
11 Hb_000331_050 0.3409393708 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
12 Hb_010171_010 0.3495716113 - - hypothetical protein VITISV_033646 [Vitis vinifera]
13 Hb_006920_050 0.3539416218 - - endo-1,4-beta-glucanase [Vigna radiata var. radiata]
14 Hb_176819_010 0.359436175 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
15 Hb_004048_030 0.3611059583 - - hypothetical protein B456_009G371200, partial [Gossypium raimondii]
16 Hb_000088_150 0.3657892257 - - hypothetical protein POPTR_0013s11250g [Populus trichocarpa]
17 Hb_003371_050 0.3683280425 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001814_060 0.3687017309 - - PREDICTED: uncharacterized protein LOC105650637 [Jatropha curcas]
19 Hb_000049_130 0.3687404431 - - PREDICTED: uncharacterized protein LOC104879855 [Vitis vinifera]
20 Hb_086993_010 0.3690974472 - - -

Gene co-expression network

sample Hb_126395_010 Hb_126395_010 Hb_002248_040 Hb_002248_040 Hb_126395_010--Hb_002248_040 Hb_115031_030 Hb_115031_030 Hb_126395_010--Hb_115031_030 Hb_003388_070 Hb_003388_070 Hb_126395_010--Hb_003388_070 Hb_005656_130 Hb_005656_130 Hb_126395_010--Hb_005656_130 Hb_007595_060 Hb_007595_060 Hb_126395_010--Hb_007595_060 Hb_001706_030 Hb_001706_030 Hb_126395_010--Hb_001706_030 Hb_002248_040--Hb_007595_060 Hb_011649_020 Hb_011649_020 Hb_002248_040--Hb_011649_020 Hb_000457_190 Hb_000457_190 Hb_002248_040--Hb_000457_190 Hb_002248_040--Hb_115031_030 Hb_000331_050 Hb_000331_050 Hb_002248_040--Hb_000331_050 Hb_145745_040 Hb_145745_040 Hb_115031_030--Hb_145745_040 Hb_115031_030--Hb_000331_050 Hb_000088_150 Hb_000088_150 Hb_115031_030--Hb_000088_150 Hb_115031_030--Hb_003388_070 Hb_003388_070--Hb_145745_040 Hb_003388_070--Hb_005656_130 Hb_000331_530 Hb_000331_530 Hb_003388_070--Hb_000331_530 Hb_000210_200 Hb_000210_200 Hb_003388_070--Hb_000210_200 Hb_006054_040 Hb_006054_040 Hb_003388_070--Hb_006054_040 Hb_004048_030 Hb_004048_030 Hb_003388_070--Hb_004048_030 Hb_001231_010 Hb_001231_010 Hb_005656_130--Hb_001231_010 Hb_003371_050 Hb_003371_050 Hb_005656_130--Hb_003371_050 Hb_010171_010 Hb_010171_010 Hb_005656_130--Hb_010171_010 Hb_000086_540 Hb_000086_540 Hb_005656_130--Hb_000086_540 Hb_166230_010 Hb_166230_010 Hb_005656_130--Hb_166230_010 Hb_105123_020 Hb_105123_020 Hb_007595_060--Hb_105123_020 Hb_001519_230 Hb_001519_230 Hb_007595_060--Hb_001519_230 Hb_095399_010 Hb_095399_010 Hb_007595_060--Hb_095399_010 Hb_007595_060--Hb_000457_190 Hb_000419_100 Hb_000419_100 Hb_001706_030--Hb_000419_100 Hb_001899_020 Hb_001899_020 Hb_001706_030--Hb_001899_020 Hb_051731_010 Hb_051731_010 Hb_001706_030--Hb_051731_010 Hb_086993_010 Hb_086993_010 Hb_001706_030--Hb_086993_010 Hb_176819_010 Hb_176819_010 Hb_001706_030--Hb_176819_010 Hb_001706_030--Hb_005656_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0885846 0.0258356 0 0.175584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.102591

CAGE analysis