Hb_126398_020

Information

Type -
Description -
Location Contig126398: 3666-8393
Sequence    

Annotation

kegg
ID rcu:RCOM_1099830
description hypothetical protein
nr
ID XP_002532131.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P53569
description CCAAT/enhancer-binding protein zeta OS=Mus musculus GN=Cebpz PE=1 SV=2
trembl
ID B9T1L2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1099830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126398_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006700_040 0.1628897773 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
3 Hb_053929_010 0.1763968258 - - hypothetical protein POPTR_0010s22320g [Populus trichocarpa]
4 Hb_000327_070 0.179501825 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
5 Hb_000656_200 0.1814793945 - - PREDICTED: uncharacterized protein LOC105631373 [Jatropha curcas]
6 Hb_152868_030 0.1912866778 - - abhydrolase domain containing, putative [Ricinus communis]
7 Hb_002232_160 0.1934935106 - - Transaminase mtnE, putative [Ricinus communis]
8 Hb_002811_200 0.1949227285 - - PREDICTED: protein IQ-DOMAIN 14-like [Jatropha curcas]
9 Hb_118157_020 0.1970302276 - - hypothetical protein MTR_3g456110 [Medicago truncatula]
10 Hb_101449_010 0.19807417 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
11 Hb_139848_010 0.199642699 - - PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic [Populus euphratica]
12 Hb_004291_040 0.2043686562 - - hexokinase [Manihot esculenta]
13 Hb_011853_010 0.2045391159 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
14 Hb_001564_070 0.2058748884 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
15 Hb_011909_010 0.2076076462 - - PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera]
16 Hb_001040_150 0.2135901387 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000173_260 0.2155639251 - - hypothetical protein L484_010046 [Morus notabilis]
18 Hb_003906_060 0.2160702534 - - hypothetical protein VITISV_022975 [Vitis vinifera]
19 Hb_005015_110 0.2161034495 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
20 Hb_000406_190 0.2197677229 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_126398_020 Hb_126398_020 Hb_006700_040 Hb_006700_040 Hb_126398_020--Hb_006700_040 Hb_053929_010 Hb_053929_010 Hb_126398_020--Hb_053929_010 Hb_000327_070 Hb_000327_070 Hb_126398_020--Hb_000327_070 Hb_000656_200 Hb_000656_200 Hb_126398_020--Hb_000656_200 Hb_152868_030 Hb_152868_030 Hb_126398_020--Hb_152868_030 Hb_002232_160 Hb_002232_160 Hb_126398_020--Hb_002232_160 Hb_011853_010 Hb_011853_010 Hb_006700_040--Hb_011853_010 Hb_001040_150 Hb_001040_150 Hb_006700_040--Hb_001040_150 Hb_033594_100 Hb_033594_100 Hb_006700_040--Hb_033594_100 Hb_006700_040--Hb_152868_030 Hb_006700_040--Hb_000656_200 Hb_053929_010--Hb_000656_200 Hb_053929_010--Hb_000327_070 Hb_000375_250 Hb_000375_250 Hb_053929_010--Hb_000375_250 Hb_170878_070 Hb_170878_070 Hb_053929_010--Hb_170878_070 Hb_101449_010 Hb_101449_010 Hb_053929_010--Hb_101449_010 Hb_004041_100 Hb_004041_100 Hb_000327_070--Hb_004041_100 Hb_003845_020 Hb_003845_020 Hb_000327_070--Hb_003845_020 Hb_001776_010 Hb_001776_010 Hb_000327_070--Hb_001776_010 Hb_000853_060 Hb_000853_060 Hb_000327_070--Hb_000853_060 Hb_000656_200--Hb_033594_100 Hb_008494_090 Hb_008494_090 Hb_000656_200--Hb_008494_090 Hb_067664_010 Hb_067664_010 Hb_000656_200--Hb_067664_010 Hb_000365_220 Hb_000365_220 Hb_000656_200--Hb_000365_220 Hb_027380_190 Hb_027380_190 Hb_152868_030--Hb_027380_190 Hb_005015_110 Hb_005015_110 Hb_152868_030--Hb_005015_110 Hb_002170_020 Hb_002170_020 Hb_152868_030--Hb_002170_020 Hb_003025_030 Hb_003025_030 Hb_152868_030--Hb_003025_030 Hb_000465_150 Hb_000465_150 Hb_152868_030--Hb_000465_150 Hb_011633_040 Hb_011633_040 Hb_152868_030--Hb_011633_040 Hb_000890_080 Hb_000890_080 Hb_002232_160--Hb_000890_080 Hb_000070_110 Hb_000070_110 Hb_002232_160--Hb_000070_110 Hb_003440_020 Hb_003440_020 Hb_002232_160--Hb_003440_020 Hb_002529_090 Hb_002529_090 Hb_002232_160--Hb_002529_090 Hb_002232_160--Hb_005015_110 Hb_001564_070 Hb_001564_070 Hb_002232_160--Hb_001564_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0498282 0.162869 0.227844 0.0558221 0.0116648 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0567125 0.0669287 0.084088 0.40029 0.327806

CAGE analysis