Hb_126535_010

Information

Type -
Description -
Location Contig126535: 3169-3821
Sequence    

Annotation

kegg
ID pop:POPTR_0004s18690g
description POPTRDRAFT_1077107; hypothetical protein
nr
ID KDP45305.1
description hypothetical protein JCGZ_09554 [Jatropha curcas]
swissprot
ID Q9FIC8
description Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1
trembl
ID A0A067LKT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09554 PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein subfamily 1 member 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126535_010 0.0 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
2 Hb_177880_010 0.0467088405 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
3 Hb_175167_020 0.0546379393 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004834_020 0.0549949992 - - major allergen Pru ar 1-like [Jatropha curcas]
5 Hb_124247_030 0.0586114865 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
6 Hb_007320_040 0.0717276075 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
7 Hb_011161_060 0.0855105809 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
8 Hb_000671_010 0.0859807588 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
9 Hb_006153_190 0.0860084554 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
10 Hb_000720_010 0.0863959809 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
11 Hb_002757_050 0.0886385686 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
12 Hb_028008_010 0.0928275227 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
13 Hb_002966_030 0.0939931645 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000205_290 0.0944823364 - - -
15 Hb_000021_090 0.0953049521 - - -
16 Hb_153457_010 0.0954805506 - - Miraculin precursor, putative [Ricinus communis]
17 Hb_001213_010 0.0966660344 - - PREDICTED: laccase-7 [Jatropha curcas]
18 Hb_054102_010 0.0995569408 - - abhydrolase domain containing, putative [Ricinus communis]
19 Hb_025490_030 0.1020117922 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
20 Hb_148383_010 0.1067656004 - - PREDICTED: protein YLS9 [Jatropha curcas]

Gene co-expression network

sample Hb_126535_010 Hb_126535_010 Hb_177880_010 Hb_177880_010 Hb_126535_010--Hb_177880_010 Hb_175167_020 Hb_175167_020 Hb_126535_010--Hb_175167_020 Hb_004834_020 Hb_004834_020 Hb_126535_010--Hb_004834_020 Hb_124247_030 Hb_124247_030 Hb_126535_010--Hb_124247_030 Hb_007320_040 Hb_007320_040 Hb_126535_010--Hb_007320_040 Hb_011161_060 Hb_011161_060 Hb_126535_010--Hb_011161_060 Hb_177880_010--Hb_007320_040 Hb_177880_010--Hb_004834_020 Hb_177880_010--Hb_124247_030 Hb_177880_010--Hb_175167_020 Hb_002966_030 Hb_002966_030 Hb_177880_010--Hb_002966_030 Hb_153457_010 Hb_153457_010 Hb_175167_020--Hb_153457_010 Hb_000513_100 Hb_000513_100 Hb_175167_020--Hb_000513_100 Hb_175167_020--Hb_002966_030 Hb_002747_010 Hb_002747_010 Hb_175167_020--Hb_002747_010 Hb_028008_010 Hb_028008_010 Hb_175167_020--Hb_028008_010 Hb_004834_020--Hb_007320_040 Hb_004834_020--Hb_124247_030 Hb_004834_020--Hb_175167_020 Hb_004834_020--Hb_002966_030 Hb_025490_030 Hb_025490_030 Hb_124247_030--Hb_025490_030 Hb_000021_090 Hb_000021_090 Hb_124247_030--Hb_000021_090 Hb_124247_030--Hb_007320_040 Hb_007320_040--Hb_002966_030 Hb_007320_040--Hb_002747_010 Hb_000671_010 Hb_000671_010 Hb_011161_060--Hb_000671_010 Hb_002757_050 Hb_002757_050 Hb_011161_060--Hb_002757_050 Hb_000720_010 Hb_000720_010 Hb_011161_060--Hb_000720_010 Hb_000205_290 Hb_000205_290 Hb_011161_060--Hb_000205_290 Hb_001213_010 Hb_001213_010 Hb_011161_060--Hb_001213_010 Hb_000948_040 Hb_000948_040 Hb_011161_060--Hb_000948_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.210356 1.61734 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 12.879 0

CAGE analysis