Hb_126643_010

Information

Type -
Description -
Location Contig126643: 1228-4144
Sequence    

Annotation

kegg
ID rcu:RCOM_1428540
description Protein transport protein Sec24C, putative
nr
ID XP_002512249.1
description Protein transport protein Sec24C, putative [Ricinus communis]
swissprot
ID Q9M081
description Protein transport protein Sec24-like At4g32640 OS=Arabidopsis thaliana GN=At4g32640 PE=2 SV=3
trembl
ID B9RET0
description Protein transport protein Sec24C, putative OS=Ricinus communis GN=RCOM_1428540 PE=4 SV=1
Gene Ontology
ID GO:0030127
description protein transport protein sec24-like at4g32640

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08058: 2426-3133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126643_010 0.0 - - Protein transport protein Sec24C, putative [Ricinus communis]
2 Hb_002255_070 0.0755015212 - - PREDICTED: isoleucine--tRNA ligase, cytoplasmic-like [Camelina sativa]
3 Hb_003544_100 0.0778668204 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
4 Hb_000627_080 0.0884027578 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
5 Hb_003052_150 0.0886310541 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
6 Hb_116929_010 0.090960324 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
7 Hb_003952_150 0.0911419394 - - PREDICTED: cactin [Jatropha curcas]
8 Hb_000390_070 0.091229158 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
9 Hb_000529_260 0.0950075745 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
10 Hb_001322_210 0.0966299777 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
11 Hb_002255_050 0.096989105 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
12 Hb_009411_010 0.0973922616 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
13 Hb_000206_250 0.0973991509 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
14 Hb_009627_010 0.0976073034 - - Protein dom-3, putative [Ricinus communis]
15 Hb_001930_010 0.097818952 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
16 Hb_000041_280 0.0986849638 - - PREDICTED: probable protein arginine N-methyltransferase 6 [Jatropha curcas]
17 Hb_000005_380 0.0995941247 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
18 Hb_000832_130 0.0998528057 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620 [Jatropha curcas]
19 Hb_003001_150 0.1004938663 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000514_060 0.1010385792 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_126643_010 Hb_126643_010 Hb_002255_070 Hb_002255_070 Hb_126643_010--Hb_002255_070 Hb_003544_100 Hb_003544_100 Hb_126643_010--Hb_003544_100 Hb_000627_080 Hb_000627_080 Hb_126643_010--Hb_000627_080 Hb_003052_150 Hb_003052_150 Hb_126643_010--Hb_003052_150 Hb_116929_010 Hb_116929_010 Hb_126643_010--Hb_116929_010 Hb_003952_150 Hb_003952_150 Hb_126643_010--Hb_003952_150 Hb_002255_070--Hb_000627_080 Hb_000005_380 Hb_000005_380 Hb_002255_070--Hb_000005_380 Hb_000390_070 Hb_000390_070 Hb_002255_070--Hb_000390_070 Hb_001930_010 Hb_001930_010 Hb_002255_070--Hb_001930_010 Hb_000514_060 Hb_000514_060 Hb_002255_070--Hb_000514_060 Hb_009411_010 Hb_009411_010 Hb_003544_100--Hb_009411_010 Hb_001599_030 Hb_001599_030 Hb_003544_100--Hb_001599_030 Hb_003938_080 Hb_003938_080 Hb_003544_100--Hb_003938_080 Hb_006915_060 Hb_006915_060 Hb_003544_100--Hb_006915_060 Hb_000320_200 Hb_000320_200 Hb_003544_100--Hb_000320_200 Hb_003216_080 Hb_003216_080 Hb_003544_100--Hb_003216_080 Hb_000627_080--Hb_000390_070 Hb_004055_040 Hb_004055_040 Hb_000627_080--Hb_004055_040 Hb_000244_250 Hb_000244_250 Hb_000627_080--Hb_000244_250 Hb_000627_080--Hb_001930_010 Hb_000915_050 Hb_000915_050 Hb_000627_080--Hb_000915_050 Hb_009627_010 Hb_009627_010 Hb_003052_150--Hb_009627_010 Hb_010381_060 Hb_010381_060 Hb_003052_150--Hb_010381_060 Hb_028487_110 Hb_028487_110 Hb_003052_150--Hb_028487_110 Hb_003052_150--Hb_003544_100 Hb_003052_150--Hb_009411_010 Hb_001638_250 Hb_001638_250 Hb_003052_150--Hb_001638_250 Hb_002301_080 Hb_002301_080 Hb_116929_010--Hb_002301_080 Hb_148909_030 Hb_148909_030 Hb_116929_010--Hb_148909_030 Hb_002400_240 Hb_002400_240 Hb_116929_010--Hb_002400_240 Hb_003044_020 Hb_003044_020 Hb_116929_010--Hb_003044_020 Hb_000183_020 Hb_000183_020 Hb_116929_010--Hb_000183_020 Hb_003623_030 Hb_003623_030 Hb_116929_010--Hb_003623_030 Hb_016898_010 Hb_016898_010 Hb_003952_150--Hb_016898_010 Hb_000084_120 Hb_000084_120 Hb_003952_150--Hb_000084_120 Hb_000920_210 Hb_000920_210 Hb_003952_150--Hb_000920_210 Hb_003362_070 Hb_003362_070 Hb_003952_150--Hb_003362_070 Hb_003952_150--Hb_010381_060 Hb_003952_150--Hb_000320_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.549 8.31479 4.29457 3.46044 16.72 16.2208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.46994 4.28265 11.2958 11.7113 6.62295

CAGE analysis